WormBase Tree Display for Gene: WBGene00021738
expand all nodes | collapse all nodes | view schema
| WBGene00021738 | SMap | S_parent | Sequence | Y50D4A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y50D4A.4 | |||||||
| Molecular_name | Y50D4A.4a | ||||||||
| Y50D4A.4a.1 | |||||||||
| CE46758 | |||||||||
| Y50D4A.4b | |||||||||
| CE50945 | |||||||||
| Y50D4A.4d | |||||||||
| CE50910 | |||||||||
| Y50D4A.4b.1 | |||||||||
| Y50D4A.4c | |||||||||
| Y50D4A.4d.1 | |||||||||
| Other_name | Y50D4A.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y50D4A.c | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y50D4A.4 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | Y50D4A.4 | ||||||||
| DB_info | Database | AceView | gene | 5B664 | |||||
| WormQTL | gene | WBGene00021738 | |||||||
| WormFlux | gene | WBGene00021738 | |||||||
| NDB | locus_tag | CELE_Y50D4A.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021738|UniProtKB=Q95Y58 | |||||||
| family | PTHR12897 | ||||||||
| NCBI | gene | 178616 | |||||||
| RefSeq | protein | NM_001313333.3 | |||||||
| NM_070991.9 | |||||||||
| NR_132500.1 | |||||||||
| NM_001313334.3 | |||||||||
| TrEMBL | UniProtAcc | A0A0K3AW32 | |||||||
| A0A0K3ASH4 | |||||||||
| Q95Y58 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95Y58 | |||||||
| RNAcentral | URSid | URS0000837E8A | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (219) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00001029 | ||||||||
| 00001030 | |||||||||
| 00001031 | |||||||||
| 00089635 | |||||||||
| 00125972 | |||||||||
| 00125973 | |||||||||
| Ortholog (37) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in regulation of autophagy. Predicted to be located in late endosome membrane. Predicted to be part of Mon1-Ccz1 complex. Is an ortholog of human RMC1 (regulator of MON1-CCZ1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y50D4A.4a | |||||||
| Y50D4A.4b | |||||||||
| Y50D4A.4d | |||||||||
| Corresponding_CDS_history | Y50D4A.4:wp228 | ||||||||
| Corresponding_transcript | Y50D4A.4c | ||||||||
| Y50D4A.4a.1 | |||||||||
| Y50D4A.4b.1 | |||||||||
| Y50D4A.4d.1 | |||||||||
| Other_sequence | MH04746 | ||||||||
| ES672305.1 | |||||||||
| Dviv_isotig16638 | |||||||||
| EX563510.1 | |||||||||
| EY458175.1 | |||||||||
| Dviv_isotig16639 | |||||||||
| Acan_isotig09695 | |||||||||
| EX565971.1 | |||||||||
| Oden_isotig22332 | |||||||||
| ACC27152_1 | |||||||||
| Associated_feature | WBsf652464 | ||||||||
| WBsf668737 | |||||||||
| WBsf233319 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057069 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00001585 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037320 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012115 | ||||||||
| Expr1039527 | |||||||||
| Expr1160514 | |||||||||
| Expr2007741 | |||||||||
| Expr2025984 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (55) | |||||||||
| Interaction | WBInteraction000523670 | ||||||||
| WBInteraction000523737 | |||||||||
| WBInteraction000545875 | |||||||||
| WBInteraction000546653 | |||||||||
| Map_info | Positive | Positive_clone | Y50D4A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | -19.8491 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
