WormBase Tree Display for Gene: WBGene00021702
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| WBGene00021702 | SMap | S_parent | Sequence | Y48G9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y48G9A.9 | |||||||
| Molecular_name | Y48G9A.9a | ||||||||
| Y48G9A.9a.1 | |||||||||
| CE27280 | |||||||||
| Y48G9A.9b | |||||||||
| CE22773 | |||||||||
| Y48G9A.9b.1 | |||||||||
| Other_name | Y48G9A.f | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y48G9A.9 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | Y48G9A.9 | ||||||||
| DB_info | Database | AceView | gene | 3D189 | |||||
| WormQTL | gene | WBGene00021702 | |||||||
| WormFlux | gene | WBGene00021702 | |||||||
| NDB | locus_tag | CELE_Y48G9A.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021702|UniProtKB=Q7YZG5 | |||||||
| family | PTHR19134 | ||||||||
| NCBI | gene | 175343 | |||||||
| RefSeq | protein | NM_001027722.3 | |||||||
| NM_001027721.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF320324 | |||||||
| TrEMBL | UniProtAcc | H2KZ95 | |||||||
| Q7YZG5 | |||||||||
| UniProt_GCRP | UniProtAcc | Q7YZG5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (161) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022161 | ||||||||
| 00022162 | |||||||||
| 00125957 | |||||||||
| 00125958 | |||||||||
| Ortholog (42) | |||||||||
| Paralog (65) | |||||||||
| Structured_description | Automated_description | Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in motor neuron axon guidance. Human ortholog(s) of this gene implicated in gastric adenocarcinoma. Is an ortholog of human PTPN7 (protein tyrosine phosphatase non-receptor type 7); PTPRG (protein tyrosine phosphatase receptor type G); and PTPRZ1 (protein tyrosine phosphatase receptor type Z1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3717 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9685) | ||||
| Molecular_info | Corresponding_CDS | Y48G9A.9a | |||||||
| Y48G9A.9b | |||||||||
| Corresponding_transcript | Y48G9A.9a.1 | ||||||||
| Y48G9A.9b.1 | |||||||||
| Other_sequence (51) | |||||||||
| Associated_feature | WBsf717869 | ||||||||
| WBsf991462 | |||||||||
| WBsf1014363 | |||||||||
| WBsf224485 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037277 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056987 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010565 | ||||||||
| Expr1039506 | |||||||||
| Expr1160433 | |||||||||
| Expr2007706 | |||||||||
| Expr2025947 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (128) | |||||||||
| Interaction | WBInteraction000251538 | ||||||||
| WBInteraction000291369 | |||||||||
| WBInteraction000463696 | |||||||||
| WBInteraction000465548 | |||||||||
| WBInteraction000466695 | |||||||||
| WBInteraction000468350 | |||||||||
| WBInteraction000468351 | |||||||||
| WBInteraction000471288 | |||||||||
| WBInteraction000472753 | |||||||||
| Map_info | Positive | Positive_clone | Y48G9A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -15.3065 | |||||||
| Reference | WBPaper00055090 | ||||||||
| Method | Gene |
