WormBase Tree Display for Gene: WBGene00021609
expand all nodes | collapse all nodes | view schema
| WBGene00021609 | SMap | S_parent | Sequence | Y46H3D | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | irld-17 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y46H3D.4 | ||||||||
| Molecular_name | Y46H3D.4 | ||||||||
| Y46H3D.4.1 | |||||||||
| CE50918 | |||||||||
| Other_name | CELE_Y46H3D.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | irld-17 | ||||||||
| DB_info | Database | AceView | gene | 5C113 | |||||
| WormQTL | gene | WBGene00021609 | |||||||
| WormFlux | gene | WBGene00021609 | |||||||
| NDB | locus_tag | CELE_Y46H3D.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021609|UniProtKB=Q966B5 | |||||||
| family | PTHR21662 | ||||||||
| NCBI | gene | 189969 | |||||||
| RefSeq | protein | NM_071062.2 | |||||||
| TREEFAM | TREEFAM_ID | TF317243 | |||||||
| TrEMBL | UniProtAcc | Q966B5 | |||||||
| UniProt_GCRP | UniProtAcc | Q966B5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 May 2012 15:57:08 | WBPerson2970 | Name_change | CGC_name | irld-17 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | irld | ||||||||
| Allele (97) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (68) | |||||||||
| Paralog (75) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABaraapapp; ABaraapppp; MSaapaapa; MSaapapa; and pharyngeal cell based on single-cell RNA-seq and RNA-seq studies. Is affected by several genes including daf-16; rrf-3; and clk-1 based on microarray and RNA-seq studies. Is affected by eight chemicals including Psoralens; allantoin; and metformin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Receptor L domain; Receptor L-domain; and Receptor L-domain superfamily. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46H3D.4 | |||||||
| Corresponding_CDS_history | Y46H3D.4:wp249 | ||||||||
| Corresponding_transcript | Y46H3D.4.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00056718 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020689 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018683 | ||||||||
| Expr1160187 | |||||||||
| Expr2012831 | |||||||||
| Expr2031068 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (60) | |||||||||
| Map_info | Map | V | Position | -17.8258 | |||||
| Positive | Positive_clone | Y46H3D | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
