WormBase Tree Display for Gene: WBGene00021568
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WBGene00021568 | SMap | S_parent | Sequence | Y45G12C | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | srt-2 | Person_evidence | WBPerson655 | |||||
Sequence_name | Y45G12C.5 | ||||||||
Molecular_name | Y45G12C.5 | ||||||||
Y45G12C.5.1 | |||||||||
CE21939 | |||||||||
Other_name | CELE_Y45G12C.5 | Accession_evidence | NDB | BX284605 | |||||
Public_name | srt-2 | ||||||||
DB_info | Database | AceView | gene | 5D21 | |||||
WormFlux | gene | WBGene00021568 | |||||||
NDB | locus_tag | CELE_Y45G12C.5 | |||||||
NCBI | gene | 189934 | |||||||
RefSeq | protein | NM_071294.1 | |||||||
TREEFAM | TREEFAM_ID | TF315399 | |||||||
TrEMBL | UniProtAcc | G5EF36 | |||||||
UniProt_GCRP | UniProtAcc | G5EF36 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 02 Dec 2004 09:41:19 | WBPerson2970 | Name_change | CGC_name | srt-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | srt | ||||||||
Allele (12) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (17) | |||||||||
Paralog (68) | |||||||||
Structured_description | Automated_description | Is affected by rsr-2 and pgrn-1 based on tiling array and RNA-seq studies. Is affected by aldicarb based on microarray studies. Is predicted to encode a protein with the following domains: 7TM GPCR, serpentine receptor class t (Srt) and Serpentine type 7TM GPCR chemoreceptor Srt. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y45G12C.5 | |||||||
Corresponding_transcript | Y45G12C.5.1 | ||||||||
Experimental_info | RNAi_result | WBRNAi00010670 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040416 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00040415 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020626 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1160096 | ||||||||
Microarray_results | SMD_Y45G12C.5 | ||||||||
Expression_cluster | WBPaper00033070:Rhine_downregulated | ||||||||
WBPaper00038061:aldicarb_upregulated | |||||||||
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray | |||||||||
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray | |||||||||
WBPaper00044246:pgrn-1_ced-3_downregulated | |||||||||
WBPaper00045420:fertilization_downregulated_transcript | |||||||||
WBPaper00053368:F.oxysporum_regulated | |||||||||
cgc4489_group_9 | |||||||||
Interaction (45) | |||||||||
Map_info | Map | V | Position | -14.8331 | |||||
Positive | Positive_clone | Y45G12C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |