WormBase Tree Display for Gene: WBGene00021544

WBGene00021544 SMap: S_parent: Sequence: Y43B11AR
  Identity: Version: 1
    Name: Sequence_name: Y43B11AR.3
      Molecular_name: Y43B11AR.3
        Y43B11AR.3.1
        CE49239
      Other_name: Y43B11AR.c Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y43B11AR.3 Accession_evidence: NDB BX284604
      Public_name: Y43B11AR.3
    DB_info: Database: AceView gene 4H846
        WormQTL gene WBGene00021544
        WormFlux gene WBGene00021544
        NDB locus_tag CELE_Y43B11AR.3
        Panther gene CAEEL|WormBase=WBGene00021544|UniProtKB=Q9N3X3
          family PTHR13195
        NCBI gene 177480
        RefSeq protein NM_068701.8
        TREEFAM TREEFAM_ID TF320759
        TrEMBL UniProtAcc Q9N3X3
        UniProt_GCRP UniProtAcc Q9N3X3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (17)
    Strain: WBStrain00031855
    RNASeq_FPKM (74)
    GO_annotation: 00125874
      00125875
      00125876
      00125877
    Ortholog: WBGene00071207 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00028152 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00148445 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00145785 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00208349 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226793 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g8934 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1470 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15491 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2251 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6320 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g11590 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3497 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g17381 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g25524 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4223 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00577.g12408 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y43B11AR.3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21095 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00107.g4491 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06565 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_013843 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11453 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g10558 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40289610 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g10750 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00256136 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285862 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0033060 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040704-41 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:17170 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:2442186 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      RGD:1359394 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
    Structured_description: Automated_description: Predicted to enable RNA binding activity and pseudouridine synthase activity. Predicted to be involved in pseudouridine synthesis. Is an ortholog of human TRUB2 (TruB pseudouridine synthase family member 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y43B11AR.3
    Corresponding_CDS_history: Y43B11AR.3:wp154
      Y43B11AR.3:wp225
      Y43B11AR.3:wp240
    Corresponding_transcript: Y43B11AR.3.1
    Other_sequence: Dviv_isotig18252
      CRC08250_1
      Oden_isotig22328
      CBC02395_1
      CR05592
      CJC16538_1
      Acan_isotig13111
      Tcir_isotig16987
    Associated_feature: WBsf230217
  Experimental_info: RNAi_result: WBRNAi00056458 Inferred_automatically: RNAi_primary
      WBRNAi00037031 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013795
      Expr1039424
      Expr1159930
      Expr2007473
      Expr2025710
    Drives_construct: WBCnstr00024506
    Construct_product: WBCnstr00024506
    Microarray_results (14)
    Expression_cluster (123)
    Interaction: WBInteraction000031337
      WBInteraction000226420
      WBInteraction000226421
      WBInteraction000249158
      WBInteraction000507397
  Map_info: Positive: Positive_clone: Y43B11AR Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 3.28829
  Reference: WBPaper00038491
    WBPaper00054284
    WBPaper00055090
  Method: Gene