WormBase Tree Display for Gene: WBGene00021541

WBGene00021541 SMap: S_parent: Sequence: Y42H9B
  Identity: Version: 1
    Name: Sequence_name: Y42H9B.3
      Molecular_name: Y42H9B.3
        Y42H9B.3.1
        CE25279
      Other_name: Y42H9B.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y42H9B.d Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y42H9B.3 Accession_evidence: NDB BX284604
      Public_name: Y42H9B.3
    DB_info: Database: AceView gene 4I774
        WormQTL gene WBGene00021541
        WormFlux gene WBGene00021541
        NDB locus_tag CELE_Y42H9B.3
        NCBI gene 189844
        RefSeq protein NM_068939.6
        TREEFAM TREEFAM_ID TF315683
        TrEMBL UniProtAcc Q9N3X7
        UniProt_GCRP UniProtAcc Q9N3X7
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (29)
    RNASeq_FPKM (74)
    Ortholog: WBGene00037289 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00059402 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00145153 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00133472 Caenorhabditis japonica From_analysis: OMA
      WBGene00141873 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g10798 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g10799 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g10523 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7099 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7225 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9597 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11966 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g8847 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6546 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-Y42H9B.3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold23.g94 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00364.g10170 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_15976 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014777 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_40105800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g10974 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in GLR; body wall muscle cell; germ line; germline precursor cell; and head mesodermal cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including skn-1; glp-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by eleven chemicals including rotenone; manganese chloride; and D-glucose based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y42H9B.3
    Corresponding_transcript: Y42H9B.3.1
    Other_sequence: CR08826
      CBC06158_1
      CBC06251_1
      CR08827
      CRC10608_1
      CJC17737_1
      FD517647.1
      CSC01655_1
    Associated_feature: WBsf651973
      WBsf997099
      WBsf997100
      WBsf997101
      WBsf997102
      WBsf1017781
      WBsf1017782
      WBsf230365
  Experimental_info: RNAi_result: WBRNAi00037029 Inferred_automatically: RNAi_primary
      WBRNAi00072307 Inferred_automatically: RNAi_primary
      WBRNAi00056452 Inferred_automatically: RNAi_primary
      WBRNAi00072306 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020072
      Expr1039421
      Expr1159925
      Expr2007470
      Expr2025707
    Drives_construct: WBCnstr00024508
    Construct_product: WBCnstr00024508
    Microarray_results (16)
    Expression_cluster (130)
  Map_info: Positive: Positive_clone: Y42H9B Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 3.5787
  Method: Gene