WormBase Tree Display for Gene: WBGene00021515
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| WBGene00021515 | SMap | S_parent | Sequence | Y41D4B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-23 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | Y41D4B.12 | ||||||||
| Molecular_name | Y41D4B.12a | ||||||||
| Y41D4B.12a.1 | |||||||||
| CE27623 | |||||||||
| Y41D4B.12b | |||||||||
| CE31647 | |||||||||
| Y41D4B.12a.2 | |||||||||
| Y41D4B.12b.1 | |||||||||
| Other_name | CELE_Y41D4B.12 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | set-23 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-23 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (126) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Contained_in_operon | CEOP4047 | ||||||||
| Ortholog (45) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | set-23 encodes, by alternative splicing, one isoform of a putative histone H3 lysine-9 methyltransferase orthologous to human SETMAR (OMIM:609834); set-23(n4496) has an embryonic lethal phenotype. | Paper_evidence | WBPaper00030864 | |||||
| WBPaper00031077 | |||||||||
| WBPaper00031078 | |||||||||
| WBPaper00031079 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable double-stranded DNA binding activity and histone methyltransferase activity. Predicted to be involved in chromatin remodeling and methylation. Predicted to be located in chromosome and nucleus. Expressed in hypodermis. Is an ortholog of human SETMAR (SET domain and mariner transposase fusion gene). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y41D4B.12a | |||||||
| Y41D4B.12b | |||||||||
| Corresponding_transcript | Y41D4B.12a.1 | ||||||||
| Y41D4B.12a.2 | |||||||||
| Y41D4B.12b.1 | |||||||||
| Other_sequence | CBC00896_1 | ||||||||
| AE03310 | |||||||||
| CR10636 | |||||||||
| CRC09922_1 | |||||||||
| Acan_isotig13862 | |||||||||
| JG463663.1 | |||||||||
| AYC01663_1 | |||||||||
| Associated_feature | WBsf227959 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00109170 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00109462 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020475 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109365 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020480 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109559 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056379 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113456 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109268 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091507 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14364 | ||||||||
| Expr1028038 | |||||||||
| Expr1039405 | |||||||||
| Expr1159866 | |||||||||
| Expr2015768 | |||||||||
| Expr2034001 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (91) | |||||||||
| Interaction | WBInteraction000113529 | ||||||||
| WBInteraction000185839 | |||||||||
| WBInteraction000185982 | |||||||||
| WBInteraction000186052 | |||||||||
| WBInteraction000186356 | |||||||||
| WBInteraction000186933 | |||||||||
| WBInteraction000187003 | |||||||||
| WBInteraction000187004 | |||||||||
| WBInteraction000187146 | |||||||||
| WBInteraction000187421 | |||||||||
| WBInteraction000187422 | |||||||||
| WBInteraction000189765 | |||||||||
| WBInteraction000202794 | |||||||||
| WBInteraction000210469 | |||||||||
| WBInteraction000210470 | |||||||||
| WBInteraction000210471 | |||||||||
| WBInteraction000210472 | |||||||||
| WBInteraction000210473 | |||||||||
| WBInteraction000210474 | |||||||||
| WBInteraction000210475 | |||||||||
| WBInteraction000210476 | |||||||||
| WBInteraction000210477 | |||||||||
| WBInteraction000210478 | |||||||||
| WBInteraction000210479 | |||||||||
| WBInteraction000210480 | |||||||||
| WBInteraction000210481 | |||||||||
| WBInteraction000210482 | |||||||||
| WBInteraction000281909 | |||||||||
| WBInteraction000284963 | |||||||||
| WBInteraction000290594 | |||||||||
| WBInteraction000299325 | |||||||||
| WBInteraction000311587 | |||||||||
| WBInteraction000337376 | |||||||||
| WBInteraction000340766 | |||||||||
| WBInteraction000340926 | |||||||||
| WBInteraction000341292 | |||||||||
| WBInteraction000341375 | |||||||||
| WBInteraction000347225 | |||||||||
| WBInteraction000359295 | |||||||||
| WBInteraction000379911 | |||||||||
| WBInteraction000464693 | |||||||||
| WBInteraction000469973 | |||||||||
| WBInteraction000471054 | |||||||||
| WBInteraction000471717 | |||||||||
| WBInteraction000474899 | |||||||||
| WBInteraction000528034 | |||||||||
| Map_info | Map | IV | Position | -16.5598 | Error | 0.016315 | |||
| Positive | Positive_clone | Y41D4B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030864 | ||||||||
| WBPaper00032309 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057162 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
