WormBase Tree Display for Gene: WBGene00021496
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| WBGene00021496 | SMap | S_parent | Sequence | Y40C5A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | daf-42 | Person_evidence | WBPerson360 | |||||
| WBPerson31239 | |||||||||
| Sequence_name | Y40C5A.3 | ||||||||
| Molecular_name | Y40C5A.3a | ||||||||
| Y40C5A.3a.1 | |||||||||
| CE49599 | |||||||||
| Y40C5A.3b | |||||||||
| CE49494 | |||||||||
| Y40C5A.3c | |||||||||
| CE49539 | |||||||||
| Y40C5A.3d | |||||||||
| CE49567 | |||||||||
| Y40C5A.3e | |||||||||
| CE49507 | |||||||||
| Y40C5A.3f | |||||||||
| CE49538 | |||||||||
| Y40C5A.3g | |||||||||
| CE49521 | |||||||||
| Y40C5A.3h | |||||||||
| CE49554 | |||||||||
| Y40C5A.3i | |||||||||
| CE49568 | |||||||||
| Y40C5A.3j | |||||||||
| CE49596 | |||||||||
| Y40C5A.3k | |||||||||
| CE49505 | |||||||||
| Y40C5A.3l | |||||||||
| CE49537 | |||||||||
| Y40C5A.3m | |||||||||
| CE49555 | |||||||||
| Y40C5A.3n | |||||||||
| CE49506 | |||||||||
| Y40C5A.3o | |||||||||
| CE49490 | |||||||||
| Y40C5A.3p | |||||||||
| CE49523 | |||||||||
| Y40C5A.3q | |||||||||
| CE49522 | |||||||||
| Y40C5A.3b.1 | |||||||||
| Y40C5A.3c.1 | |||||||||
| Y40C5A.3d.1 | |||||||||
| Y40C5A.3e.1 | |||||||||
| Y40C5A.3f.1 | |||||||||
| Y40C5A.3g.1 | |||||||||
| Y40C5A.3h.1 | |||||||||
| Y40C5A.3i.1 | |||||||||
| Y40C5A.3j.1 | |||||||||
| Y40C5A.3k.1 | |||||||||
| Y40C5A.3l.1 | |||||||||
| Y40C5A.3m.1 | |||||||||
| Y40C5A.3n.1 | |||||||||
| Y40C5A.3o.1 | |||||||||
| Y40C5A.3p.1 | |||||||||
| Y40C5A.3q.1 | |||||||||
| Other_name | CELE_Y40C5A.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | daf-42 | ||||||||
| DB_info | Database | AceView | gene | 4I100 | |||||
| WormQTL | gene | WBGene00021496 | |||||||
| WormFlux | gene | WBGene00021496 | |||||||
| NDB | locus_tag | CELE_Y40C5A.3 | |||||||
| NCBI | gene | 177507 | |||||||
| RefSeq | protein (17) | ||||||||
| TREEFAM | TREEFAM_ID | TF342754 | |||||||
| TrEMBL | UniProtAcc (17) | ||||||||
| UniProt_GCRP | UniProtAcc | W6RTL3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 May 2019 14:10:26 | WBPerson1983 | Name_change | CGC_name | daf-42 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | daf | ||||||||
| Allele (142) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (19) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalaappppa; ABalapaappa; ABalapapapa; ABalapappaa; and anterior ganglion (post) based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by four chemicals including Zidovudine; sucrose; and stearic acid based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS (17) | ||||||||
| Corresponding_CDS_history | Y40C5A.3:wp203 | ||||||||
| Y40C5A.3:wp208 | |||||||||
| Y40C5A.3a:wp241 | |||||||||
| Y40C5A.3b:wp241 | |||||||||
| Corresponding_transcript (17) | |||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf651906 | ||||||||
| WBsf668014 | |||||||||
| WBsf996941 | |||||||||
| WBsf996942 | |||||||||
| WBsf1017688 | |||||||||
| WBsf1017689 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020449 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020450 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020451 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056325 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020447 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059962 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059961 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059963 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020446 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059964 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr16428 | ||||||||
| Expr1024795 | |||||||||
| Expr1039394 | |||||||||
| Expr1159813 | |||||||||
| Expr2007417 | |||||||||
| Expr2025653 | |||||||||
| Drives_construct | WBCnstr00043013 | ||||||||
| Construct_product | WBCnstr00043013 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (108) | |||||||||
| Map_info | Map | IV | Position | 3.32865 | |||||
| Positive | Positive_clone | Y40C5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00057489 | ||||||||
| WBPaper00062835 | |||||||||
| WBPaper00065378 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
