WormBase Tree Display for Gene: WBGene00021491
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WBGene00021491 | SMap | S_parent | Sequence | Y40B10A | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | comt-4 | Person_evidence | WBPerson260 | |||
Sequence_name | Y40B10A.6 | ||||||
Molecular_name | Y40B10A.6 | ||||||
Y40B10A.6.1 | |||||||
CE21794 | |||||||
Other_name | Y40B10A.e | Curator_confirmed | WBPerson1983 | ||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
CELE_Y40B10A.6 | Accession_evidence | NDB | BX284605 | ||||
Public_name | comt-4 | ||||||
DB_info | Database | AceView | gene | 5C522 | |||
WormQTL | gene | WBGene00021491 | |||||
WormFlux | gene | WBGene00021491 | |||||
NDB | locus_tag | CELE_Y40B10A.6 | |||||
Panther | gene | CAEEL|WormBase=WBGene00021491|UniProtKB=Q965W4 | |||||
family | PTHR10509 | ||||||
NCBI | gene | 189789 | |||||
RefSeq | protein | NM_071157.2 | |||||
TREEFAM | TREEFAM_ID | TF312986 | |||||
TrEMBL | UniProtAcc | Q965W4 | |||||
UniProt_GCRP | UniProtAcc | Q965W4 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | comt | ||||||
Allele (83) | |||||||
Strain | WBStrain00054677 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00090721 | ||||||
00090722 | |||||||
00090723 | |||||||
00090724 | |||||||
00125831 | |||||||
Ortholog (58) | |||||||
Paralog | WBGene00012518 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | |||||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00018741 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00021487 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Inparanoid_8 | |||||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00021492 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Inparanoid_8 | |||||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Predicted to enable S-adenosylmethionine-dependent methyltransferase activity. Predicted to be involved in methylation. Is an ortholog of human COMTD1 (catechol-O-methyltransferase domain containing 1). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y40B10A.6 | |||||
Corresponding_transcript | Y40B10A.6.1 | ||||||
Other_sequence | SS00758 | ||||||
JI175513.1 | |||||||
ASC25889_1 | |||||||
AS08498 | |||||||
AS10153 | |||||||
Tcir_isotig08428 | |||||||
SSC04249_1 | |||||||
Associated_feature | WBsf652494 | ||||||
WBsf999441 | |||||||
WBsf233383 | |||||||
WBsf233384 | |||||||
Experimental_info | RNAi_result | WBRNAi00020439 | Inferred_automatically | RNAi_primary | |||
WBRNAi00036967 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00070074 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00083991 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00056307 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00069438 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr16104 | ||||||
Expr1021425 | |||||||
Expr1159796 | |||||||
Expr2010453 | |||||||
Expr2028693 | |||||||
Drives_construct | WBCnstr00024531 | ||||||
Construct_product | WBCnstr00024531 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (259) | |||||||
Interaction (11) | |||||||
Map_info | Map | V | Position | -16.1154 | |||
Positive | Positive_clone | Y40B10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00042257 | |||||||
WBPaper00053023 | |||||||
WBPaper00055090 | |||||||
WBPaper00062565 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |