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WormBase Tree Display for Gene: WBGene00021479

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Name Class

WBGene00021479SMapS_parentSequenceY39H10A
IdentityVersion2
NameCGC_nameoac-55Person_evidenceWBPerson567
Sequence_nameY39H10A.2
Molecular_nameY39H10A.2a
Y39H10A.2a.1
CE21778
Y39H10A.2b
CE51648
Y39H10A.2c
CE51641
Y39H10A.2b.1
Y39H10A.2c.1
Other_nameY39H10A.hCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y39H10A.2Accession_evidenceNDBBX284605
Public_nameoac-55
DB_infoDatabaseAceViewgene5E243
WormQTLgeneWBGene00021479
WormFluxgeneWBGene00021479
NDBlocus_tagCELE_Y39H10A.2
PanthergeneCAEEL|Gene_ORFName=CELE_Y39H10A.2|UniProtKB=A0A164D3K0
familyPTHR11161
NCBIgene178792
RefSeqproteinNM_001330808.1
NM_001330807.1
NM_071640.2
TrEMBLUniProtAccQ9N3Z2
A0A164D3K0
A0A168HAD6
UniProt_GCRPUniProtAccA0A164D3K0
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
218 Jul 2008 14:49:34WBPerson2970Name_changeCGC_nameoac-55
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classoac
Allele (133)
Possibly_affected_byWBVar02154059
RNASeq_FPKM (74)
GO_annotation00002135
00002227
00120579
Ortholog (59)
Paralog (17)
Structured_descriptionAutomated_descriptionPredicted to enable acyltransferase activity, transferring groups other than amino-acyl groups. Predicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSY39H10A.2a
Y39H10A.2b
Y39H10A.2c
Corresponding_transcriptY39H10A.2a.1
Y39H10A.2b.1
Y39H10A.2c.1
Other_sequenceAcan_isotig10195
ACC15681_1
FC554895.1
FC539041.1
EY469797.1
Experimental_infoRNAi_resultWBRNAi00000906Inferred_automaticallyRNAi_primary
WBRNAi00036962Inferred_automaticallyRNAi_primary
WBRNAi00056292Inferred_automaticallyRNAi_primary
Expr_patternExpr1017272
Expr1159779
Expr2014578
Expr2032811
Drives_constructWBCnstr00024535
Construct_productWBCnstr00024535
Microarray_results (18)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00040285:H2S_24hr_upregulated
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00045050:csr-1(hypomorph)_upregulated
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_upregulated
WBPaper00045861:ash-2(tm1095)_upregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00049377:MWCNT_upregulated
WBPaper00050015:ifg-1(RNAi)_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050163:chd-3(eh4)_upregulated_100-cell-embryo
WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055226:ADR-2_target_adr-1(tm668)
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_downregulated_endo-siRNA_targets
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058948:PA14_upregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060445:ikb-1(nr2027)_downregulated_L1
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00061081:E.faecalis_downregulated_N2
WBPaper00061340:ILso
WBPaper00061340:M1_parent
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:srj-42-srw-113
WBPaper00062146:MOG-7-degron_2h_regulated
WBPaper00062456:doxycycline_downregulated_N2_transcript
WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_upregulated_N2
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066038:mip-1(how5)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00027111:rrf-1(pk1417)_upregulated
WBPaper00027111:rrf-3(pk1426)_upregulated
WBPaper00034757:up_by_oxidative_stress
WBPaper00036286:Pattern_F
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00048989:N2_allantoin_upregulated
Map_infoMapVPosition-8.00453Error0.003355
PositivePositive_cloneY39H10AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene