WormBase Tree Display for Gene: WBGene00021475

WBGene00021475 SMap: S_parent: Sequence: Y39G10AR
  Identity: Version: 2
    Name: CGC_name: tbca-1 Person_evidence: WBPerson1836
      Sequence_name: Y39G10AR.20
      Molecular_name: Y39G10AR.20
        Y39G10AR.20.1
        CE28980
      Other_name: CELE_Y39G10AR.20 Accession_evidence: NDB BX284601
      Public_name: tbca-1
    DB_info: Database: AceView gene 1C881
        WormQTL gene WBGene00021475
        WormFlux gene WBGene00021475
        NDB locus_tag CELE_Y39G10AR.20
        Panther gene CAEEL|WormBase=WBGene00021475|UniProtKB=Q95XR1
          family PTHR21500
        NCBI gene 171791
        RefSeq protein NM_058558.7
        TREEFAM TREEFAM_ID TF313971
        TrEMBL UniProtAcc Q95XR1
        UniProt_GCRP UniProtAcc Q95XR1
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 21 Jul 2014 15:41:21 WBPerson2970 Name_change: CGC_name: tbca-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tbca
    Allele (12)
    Strain: WBStrain00051352
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP1040
    Ortholog: WBGene00026652 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057210 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00160018 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00147797 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00176584 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226753 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g3707 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7254 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7718 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g13458 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g8060 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g2326 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cang_2012_03_13_00010.g814 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-tbca-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_01420.g20808 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_23105 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000784 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_10222410 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g316 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242769 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00115718 Pristionchus pacificus From_analysis: WormBase-Compara
      SGD:S000005791 Saccharomyces cerevisiae From_analysis: Hieranoid
            OrthoFinder
            Panther
      FB:FBgn0039869 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      ZFIN:ZDB-GENE-040426-962 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:11579 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:107549 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1311538 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable tubulin binding activity. Predicted to be involved in protein folding and tubulin complex assembly. Predicted to be located in microtubule cytoskeleton. Is an ortholog of human TBCA (tubulin folding cofactor A). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y39G10AR.20
    Corresponding_transcript: Y39G10AR.20.1
    Other_sequence: CR07155
      CBC00979_1
      NBC04819_1
      OOC03121_1
      CRC11990_1
      Oden_isotig23197
      NB07315
      CJC01921_1
    Associated_feature: WBsf643089
      WBsf643090
      WBsf656062
      WBsf980959
      WBsf982846
      WBsf217293
      WBsf217294
  Experimental_info: RNAi_result: WBRNAi00056273 Inferred_automatically: RNAi_primary
      WBRNAi00117101 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018706
      Expr1039386
      Expr1159755
      Expr2017337
      Expr2035473
    Drives_construct: WBCnstr00024539
    Construct_product: WBCnstr00024539
    Microarray_results (16)
    Expression_cluster (132)
    Interaction: WBInteraction000041664
      WBInteraction000043531
      WBInteraction000568978
      WBInteraction000581220
  Map_info: Map: I Position: -9.40714
    Positive: Positive_clone: Y39G10AR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene