WormBase Tree Display for Gene: WBGene00021467
expand all nodes | collapse all nodes | view schema
| WBGene00021467 | SMap | S_parent | Sequence | Y39G10AR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y39G10AR.9 | |||||||
| Molecular_name | Y39G10AR.9a | ||||||||
| Y39G10AR.9a.1 | |||||||||
| CE28982 | |||||||||
| Y39G10AR.9b | |||||||||
| CE45029 | |||||||||
| Y39G10AR.9b.1 | |||||||||
| Other_name | CELE_Y39G10AR.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | Y39G10AR.9 | ||||||||
| DB_info | Database | AceView | gene | 1C875 | |||||
| WormQTL | gene | WBGene00021467 | |||||||
| WormFlux | gene | WBGene00021467 | |||||||
| NDB | locus_tag | CELE_Y39G10AR.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021467|UniProtKB=Q95XR3 | |||||||
| family | PTHR44156 | ||||||||
| NCBI | gene | 171789 | |||||||
| RefSeq | protein | NM_001262203.3 | |||||||
| NM_001262204.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF313690 | |||||||
| TrEMBL | UniProtAcc | G4SF15 | |||||||
| Q95XR3 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95XR3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (38) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00009251 | ||||||||
| Contained_in_operon | CEOP1040 | ||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00003009 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00004744 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004767 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalpppappp; ABplpaaaaa; ABpraaaappp; ABprpaaaaa; and germ line based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including age-1; hsf-1; and gld-1 based on microarray; tiling array; proteomic; and RNA-seq studies. Is affected by eight chemicals including stavudine; Zidovudine; and allantoin based on RNA-seq; proteomic; and microarray studies. Is predicted to encode a protein with the following domains: WD40/YVTN repeat-like-containing domain superfamily; WD domain, G-beta repeat; WD40 repeat; and WD40-repeat-containing domain superfamily. Is an ortholog of human PAAF1 (proteasomal ATPase associated factor 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39G10AR.9a | |||||||
| Y39G10AR.9b | |||||||||
| Corresponding_transcript | Y39G10AR.9a.1 | ||||||||
| Y39G10AR.9b.1 | |||||||||
| Other_sequence | CRC11196_1 | ||||||||
| CR01436 | |||||||||
| CJC01451_1 | |||||||||
| Acan_isotig09686 | |||||||||
| Associated_feature | WBsf643088 | ||||||||
| WBsf217289 | |||||||||
| WBsf217290 | |||||||||
| WBsf217291 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056282 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004599 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022224 | ||||||||
| Expr1039380 | |||||||||
| Expr1159765 | |||||||||
| Expr2007398 | |||||||||
| Expr2025633 | |||||||||
| Drives_construct | WBCnstr00024542 | ||||||||
| Construct_product | WBCnstr00024542 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (133) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Positive | Positive_clone | Y39G10AR | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | -9.44329 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
