WormBase Tree Display for Gene: WBGene00021458

WBGene00021458 SMap: S_parent: Sequence: Y39G10AL
  Identity: Version: 1
    Name: Sequence_name: Y39G10AL.1
      Molecular_name: Y39G10AL.1a
        Y39G10AL.1a.1
        CE26987
        Y39G10AL.1b
        CE49696
        Y39G10AL.1b.1
      Other_name: Y39G10AL.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y39G10AL.c Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y39G10AL.1 Accession_evidence: NDB BX284601
      Public_name: Y39G10AL.1
    DB_info: Database: AceView gene 1C849
        WormQTL gene WBGene00021458
        WormFlux gene WBGene00021458
        NDB locus_tag CELE_Y39G10AL.1
        NCBI gene 171783
        RefSeq protein NM_001306424.3
            NM_058550.6
        TrEMBL UniProtAcc Q9N402
            X5LXA7
        UniProt_GCRP UniProtAcc Q9N402
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (33)
    RNASeq_FPKM (74)
    Ortholog: WBGene00026645 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00145868 Caenorhabditis brenneri From_analysis: Inparanoid_8
      CSP26.g7262 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP40.g19773 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-Y39G10AL.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_01420.g20817 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_23111 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000775 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrI_pilon.g308 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00057219 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including ABplppppap; ABprppppap; AVK; MC neuron; and male distal tip cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including methylmercuric chloride; Mercuric Chloride; and rotenone based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y39G10AL.1a
      Y39G10AL.1b
    Corresponding_transcript: Y39G10AL.1a.1
      Y39G10AL.1b.1
    Associated_feature: WBsf643083
      WBsf982841
      WBsf1009316
      WBsf217281
      WBsf217282
  Experimental_info: RNAi_result: WBRNAi00087260 Inferred_automatically: RNAi_primary
      WBRNAi00087254 Inferred_automatically: RNAi_primary
      WBRNAi00087257 Inferred_automatically: RNAi_primary
      WBRNAi00056259 Inferred_automatically: RNAi_primary
      WBRNAi00056258 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017087
      Expr1039374
      Expr1159743
      Expr2007393
      Expr2025628
    Microarray_results (12)
    Expression_cluster (136)
    Interaction (15)
  Map_info: Positive: Positive_clone: Y39G10AL Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I -10.0426
  Reference: WBPaper00018667
  Method: Gene