WormBase Tree Display for Gene: WBGene00021440
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| WBGene00021440 | SMap | S_parent | Sequence | Y39A3CL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rexd-1 | Paper_evidence | WBPaper00066109 | |||||
| Sequence_name | Y39A3CL.1 | ||||||||
| Molecular_name | Y39A3CL.1a | ||||||||
| Y39A3CL.1a.1 | |||||||||
| CE42034 | |||||||||
| Y39A3CL.1b | |||||||||
| CE54516 | |||||||||
| Y39A3CL.1b.1 | |||||||||
| Other_name | CELE_Y39A3CL.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rexd-1 | ||||||||
| DB_info | Database | AceView | gene | 3C935 | |||||
| WormQTL | gene | WBGene00021440 | |||||||
| WormFlux | gene | WBGene00021440 | |||||||
| NDB | locus_tag | CELE_Y39A3CL.1 | |||||||
| NCBI | gene | 175329 | |||||||
| RefSeq | protein | NM_065062.8 | |||||||
| NM_001404269.1 | |||||||||
| TrEMBL | UniProtAcc | A0A8S4QBU0 | |||||||
| Q9N412 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9N412 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Jan 2024 23:28:21 | WBPerson51134 | Name_change | CGC_name | rexd-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rexd | ||||||||
| Allele (401) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP3068 | ||||||||
| Ortholog (23) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including I5 neuron; cholinergic neurons; germ line; germline precursor cell; and retrovesicular ganglion based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including dpy-10; hsf-1; and sir-2.1 based on microarray; RNA-seq; and proteomic studies. Is affected by eleven chemicals including Alovudine; stavudine; and Zidovudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39A3CL.1a | |||||||
| Y39A3CL.1b | |||||||||
| Corresponding_CDS_history | Y39A3CL.1:wp91 | ||||||||
| Y39A3CL.1:wp186 | |||||||||
| Corresponding_transcript | Y39A3CL.1a.1 | ||||||||
| Y39A3CL.1b.1 | |||||||||
| Other_sequence | CBC16033_1 | ||||||||
| CRC12039_1 | |||||||||
| MHC08002_1 | |||||||||
| CR11674 | |||||||||
| GO250881.1 | |||||||||
| MH09677 | |||||||||
| Associated_feature | WBsf991399 | ||||||||
| WBsf991400 | |||||||||
| WBsf1014311 | |||||||||
| WBsf1014312 | |||||||||
| WBsf224470 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020367 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056142 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020359 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014249 | ||||||||
| Expr1039365 | |||||||||
| Expr1159654 | |||||||||
| Expr2007356 | |||||||||
| Expr2025590 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (83) | |||||||||
| Interaction | WBInteraction000575604 | ||||||||
| WBInteraction000575852 | |||||||||
| Map_info | Map | III | Position | -15.9748 | |||||
| Positive | Positive_clone | Y39A3CL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00058178 | ||||||||
| WBPaper00063563 | |||||||||
| WBPaper00066109 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
