WormBase Tree Display for Gene: WBGene00021427

WBGene00021427 SMap: S_parent: Sequence: Y38F2AR
  Identity: Version: 2
    Name: CGC_name: sec-61.B
      Sequence_name: Y38F2AR.9
      Molecular_name: Y38F2AR.9
        Y38F2AR.9.1
        CE27617
      Other_name: CELE_Y38F2AR.9 Accession_evidence: NDB BX284604
      Public_name: sec-61.B
    DB_info: Database: AceView gene 4D152
        WormQTL gene WBGene00021427
        WormFlux gene WBGene00021427
        NDB locus_tag CELE_Y38F2AR.9
        Panther gene CAEEL|WormBase=WBGene00021427|UniProtKB=Q95XS2
          family PTHR13509
        NCBI gene 177027
        RefSeq protein NM_067796.9
        TREEFAM TREEFAM_ID TF313144
        TrEMBL UniProtAcc Q95XS2
        UniProt_GCRP UniProtAcc Q95XS2
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 May 2019 14:10:26 WBPerson1983 Name_change: CGC_name: sec-61.B
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sec
    Allele (10)
    Strain: WBStrain00007585
    RNASeq_FPKM (74)
    GO_annotation (14)
    Ortholog: WBGene00068878 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00036649 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00153567 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00121754 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00210290 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00095457 Pristionchus pacificus From_analysis: OMA
      WBGene00234331 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g11467 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4900 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g9844 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g22210 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22306 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g4783 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g4792 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13258 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1021 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g6279 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16225 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-Y38F2AR.9 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10766 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      GCK72_016082 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03231 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g1651 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40036800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9798 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247889 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00247898 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00278539 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00287669 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002127 Saccharomyces cerevisiae From_analysis: Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
      SGD:S000002128 Saccharomyces cerevisiae From_analysis: Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0010638 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040718-260 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:16993 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1913462 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:3642323 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1304997 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation and post-translational protein targeting to membrane, translocation. Predicted to be located in membrane. Predicted to be part of Sec61 translocon complex. Is an ortholog of human SEC61B (SEC61 translocon subunit beta). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y38F2AR.9
    Corresponding_transcript: Y38F2AR.9.1
    Other_sequence (74)
    Associated_feature: WBsf667775
      WBsf229812
      WBsf229813
  Experimental_info: RNAi_result: WBRNAi00056056 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13442
      Expr1014438
      Expr1039361
      Expr1159579
      Expr2007317
      Expr2025552
    Construct_product: WBCnstr00039536
    Microarray_results (20)
    Expression_cluster (192)
    Interaction (26)
  Map_info: Map: IV Position: -7.67607
    Positive: Positive_clone: Y38F2AR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025393
    WBPaper00038491
    WBPaper00053387
    WBPaper00055090
    WBPaper00061328
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene