WormBase Tree Display for Gene: WBGene00021420

WBGene00021420 SMap: S_parent: Sequence: Y38F2AR
  Identity: Version: 2
    Name: CGC_name: trap-3
      Sequence_name: Y38F2AR.2
      Molecular_name: Y38F2AR.2
        Y38F2AR.2.1
        CE21634
      Other_name: Y38F2A_6126.e Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y38F2AR.2 Accession_evidence: NDB BX284604
      Public_name: trap-3
    DB_info: Database: AceView gene 4D153
        WormQTL gene WBGene00021420
        WormFlux gene WBGene00021420
        NDB locus_tag CELE_Y38F2AR.2
        Panther gene CAEEL|WormBase=WBGene00021420|UniProtKB=Q95XS1
          family PTHR13399
        NCBI gene 177028
        RefSeq protein NM_067797.8
        TREEFAM TREEFAM_ID TF314998
        TrEMBL UniProtAcc Q95XS1
        UniProt_GCRP UniProtAcc Q95XS1
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 04 Oct 2007 11:57:48 WBPerson2970 Name_change: CGC_name: trap-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: trap
    Allele (19)
    RNASeq_FPKM (74)
    GO_annotation: 00089303
      00089304
      00089305
      00089306
      00089307
      00125784
      00125785
    Contained_in_operon: CEOP4684
    Ortholog: WBGene00036648 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00068879 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00160992 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00097117 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00137715 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00226696 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g11468 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4901 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g9845 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g22211 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22307 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g4791 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13259 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1022 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g6280 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16226 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00025.g1535 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-trap-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10767 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01705.g22637 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_15582 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016081 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03232 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21314 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g7922 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40036900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9799 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247142 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00296963 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301193 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301258 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0025700 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-9134 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:11325 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1914687 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:621630 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
    Structured_description: Automated_description: Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in endoplasmic reticulum. Is an ortholog of human SSR3 (signal sequence receptor subunit 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y38F2AR.2
    Corresponding_transcript: Y38F2AR.2.1
    Other_sequence (62)
    Associated_feature: WBsf047621
      WBsf645839
      WBsf659985
      WBsf981689
      WBsf995676
      WBsf995677
      WBsf1016895
      WBsf228019
      WBsf228020
  Experimental_info: RNAi_result: WBRNAi00020302 Inferred_automatically: RNAi_primary
      WBRNAi00056050 Inferred_automatically: RNAi_primary
      WBRNAi00020306 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014193
      Expr1039356
      Expr1159574
      Expr2017483
      Expr2035622
    Microarray_results (23)
    Expression_cluster (178)
    Interaction: WBInteraction000174507
      WBInteraction000174518
      WBInteraction000174519
      WBInteraction000559582
      WBInteraction000572029
      WBInteraction000582724
      WBInteraction000583528
      WBInteraction000585750
  Map_info: Map: IV Position: -7.60168 Error: 0.036956
    Positive: Positive_clone: Y38F2AR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00047692
    WBPaper00055090
    WBPaper00065356
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene