WormBase Tree Display for Gene: WBGene00021369
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| WBGene00021369 | SMap | S_parent | Sequence | Y37E11AR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | siah-1 | Person_evidence | WBPerson3411 | |||||
| Sequence_name | Y37E11AR.2 | ||||||||
| Molecular_name | Y37E11AR.2 | ||||||||
| Y37E11AR.2.1 | |||||||||
| CE21549 | |||||||||
| Other_name | Y37E11AR.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y37E11AR.d | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y37E11AR.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | siah-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 02 Feb 2007 10:20:45 | WBPerson2970 | Name_change | CGC_name | siah-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | siah | ||||||||
| Allele (55) | |||||||||
| Strain | WBStrain00003082 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (30) | |||||||||
| Structured_description | Automated_description | Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Involved in programmed cell death involved in cell development. Predicted to be located in cytoplasm. Expressed in AIYL; AIYR; and tail. Is an ortholog of human SIAH1 (siah E3 ubiquitin protein ligase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y37E11AR.2 | |||||||
| Corresponding_transcript | Y37E11AR.2.1 | ||||||||
| Other_sequence (54) | |||||||||
| Associated_feature | WBsf996045 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00055909 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00082220 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075839 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036802 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020226 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082227 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram27 | ||||||||
| Chronogram1880 | |||||||||
| Expr6933 | |||||||||
| Expr6934 | |||||||||
| Expr10090 | |||||||||
| Expr1025211 | |||||||||
| Expr1039332 | |||||||||
| Expr1159430 | |||||||||
| Expr2015813 | |||||||||
| Expr2034046 | |||||||||
| Drives_construct | WBCnstr00003296 | ||||||||
| WBCnstr00004571 | |||||||||
| WBCnstr00015062 | |||||||||
| WBCnstr00024574 | |||||||||
| Construct_product | WBCnstr00024574 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (167) | |||||||||
| Interaction (90) | |||||||||
| Map_info | Map | IV | Position | -2.42817 | Error | 0.025563 | |||
| Positive | Positive_clone | Y37E11AR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006488 | ||||||||
| WBPaper00037327 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038821 | |||||||||
| WBPaper00040433 | |||||||||
| WBPaper00042635 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056902 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
