WormBase Tree Display for Gene: WBGene00021335
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| WBGene00021335 | SMap | S_parent | Sequence | Y34D9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | spp-23 | |||||||
| Sequence_name | Y34D9A.11 | ||||||||
| Molecular_name | Y34D9A.11 | ||||||||
| Y34D9A.11.1 | |||||||||
| CE21539 | |||||||||
| Other_name | Y34D9A.g | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y34D9A.11 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | spp-23 | ||||||||
| DB_info | Database | AceView | gene | 1B493 | |||||
| WormFlux | gene | WBGene00021335 | |||||||
| NDB | locus_tag | CELE_Y34D9A.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021335|UniProtKB=Q6AW11 | |||||||
| family | PTHR21579 | ||||||||
| NCBI | gene | 259362 | |||||||
| RefSeq | protein | NM_001026570.5 | |||||||
| TREEFAM | TREEFAM_ID | TF343148 | |||||||
| TrEMBL | UniProtAcc | Q6AW11 | |||||||
| UniProt_GCRP | UniProtAcc | Q6AW11 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Apr 2005 11:57:26 | WBPerson2970 | Name_change | CGC_name | spp-23 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spp | ||||||||
| Allele | WBVar00611040 | ||||||||
| WBVar00611041 | |||||||||
| WBVar00611042 | |||||||||
| WBVar01499559 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01499619 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP1788 | ||||||||
| Ortholog (26) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Automated_description | Enriched in DA neuron; VA neuron; intestine; and pharyngeal muscle cell based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on RNA-seq; tiling array; and microarray studies. Is affected by twenty-two chemicals including rotenone; Tunicamycin; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Saposin B type domain; Saposin-like type B, region 2; and Saposin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y34D9A.11 | |||||||
| Corresponding_transcript | Y34D9A.11.1 | ||||||||
| Other_sequence | CBC13425_1 | ||||||||
| Associated_feature | WBsf655877 | ||||||||
| WBsf717447 | |||||||||
| WBsf980934 | |||||||||
| WBsf217175 | |||||||||
| WBsf217176 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004581 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1014514 | ||||||||
| Expr1159356 | |||||||||
| Expr2016079 | |||||||||
| Expr2034315 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (255) | |||||||||
| Map_info | Map | I | Position | -17.4014 | |||||
| Positive | Positive_clone | Y34D9A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
