WormBase Tree Display for Gene: WBGene00021290
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| WBGene00021290 | SMap | S_parent | Sequence | Y25C1A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-122 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | Y25C1A.3 | ||||||||
| Molecular_name | Y25C1A.3 | ||||||||
| Y25C1A.3.1 | |||||||||
| CE21470 | |||||||||
| Other_name | Y25C1A.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y25C1A.3 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | clec-122 | ||||||||
| DB_info | Database | AceView | gene | 2D393 | |||||
| WormQTL | gene | WBGene00021290 | |||||||
| WormFlux | gene | WBGene00021290 | |||||||
| NDB | locus_tag | CELE_Y25C1A.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021290|UniProtKB=Q9TYL3 | |||||||
| family | PTHR23124 | ||||||||
| NCBI | gene | 189536 | |||||||
| RefSeq | protein | NM_062046.1 | |||||||
| TREEFAM | TREEFAM_ID | TF315870 | |||||||
| TrEMBL | UniProtAcc | Q9TYL3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TYL3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-122 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (35) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (28) | |||||||||
| Paralog (126) | |||||||||
| Structured_description | Automated_description | Is affected by several genes including pmk-1; pgl-1; and glh-1 based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; T-complex protein 10, C-terminal domain superfamily; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y25C1A.3 | |||||||
| Corresponding_transcript | Y25C1A.3.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00020139 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055736 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026598 | ||||||||
| Expr1039281 | |||||||||
| Expr1159255 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (25) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | II | Position | -8.51745 | Error | 0.006962 | |||
| Positive | Positive_clone | Y25C1A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00055090 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
