WormBase Tree Display for Gene: WBGene00021282
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| WBGene00021282 | SMap | S_parent | Sequence | Y24D9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-21 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | Y24D9A.2 | ||||||||
| Molecular_name | Y24D9A.2 | ||||||||
| Y24D9A.2.1 | |||||||||
| CE33849 | |||||||||
| Other_name | Y24D9A.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y24D9A.g | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y24D9A.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | set-21 | ||||||||
| DB_info | Database | AceView | gene | 4F157 | |||||
| WormQTL | gene | WBGene00021282 | |||||||
| WormFlux | gene | WBGene00021282 | |||||||
| NDB | locus_tag | CELE_Y24D9A.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021282|UniProtKB=Q966C5 | |||||||
| family | PTHR47250 | ||||||||
| NCBI | gene | 177204 | |||||||
| RefSeq | protein | NM_068154.7 | |||||||
| TREEFAM | TREEFAM_ID | TF321419 | |||||||
| TrEMBL | UniProtAcc | Q966C5 | |||||||
| UniProt_GCRP | UniProtAcc | Q966C5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-21 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (43) | |||||||||
| Possibly_affected_by | WBVar02158481 | ||||||||
| WBVar02158482 | |||||||||
| WBVar02158483 | |||||||||
| WBVar02158484 | |||||||||
| Strain | WBStrain00032484 | ||||||||
| WBStrain00032487 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (55) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | set-21 encodes a putative histone H3 lysine-9 methyltransferase that postpones polyglutamine aggregation in vivo, and that is predicted to function in transcriptional repression; SET-21 has no non-nematode orthologs, but is paralogous to SET-6, SET-15, and SET-32; SET-21 protein is specifically cleaved by CED-3, both in a genomic expression screen and in an in vitro assay; set-21(RNAi) has no obvious phenotype other than premature aggregation of transgenic Q33/Q35-YFP. | Paper_evidence | WBPaper00006510 | |||||
| WBPaper00023856 | |||||||||
| WBPaper00030864 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Expressed in hypodermis and somatic cell. Is predicted to encode a protein with the following domains: SET domain superfamily and SET domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y24D9A.2 | |||||||
| Corresponding_CDS_history | Y24D9A.2:wp98 | ||||||||
| Corresponding_transcript | Y24D9A.2.1 | ||||||||
| Other_sequence | CR00341 | ||||||||
| CRC01632_1 | |||||||||
| CSC01237_1 | |||||||||
| FD514773.1 | |||||||||
| CR00557 | |||||||||
| Associated_feature | WBsf645923 | ||||||||
| WBsf996252 | |||||||||
| WBsf996253 | |||||||||
| WBsf1017227 | |||||||||
| WBsf228193 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00113454 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00111117 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00064913 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117754 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117753 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055285 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14363 | ||||||||
| Expr16243 | |||||||||
| Expr16246 | |||||||||
| Expr1039275 | |||||||||
| Expr1159239 | |||||||||
| Expr2015766 | |||||||||
| Expr2033999 | |||||||||
| Drives_construct | WBCnstr00042856 | ||||||||
| Construct_product | WBCnstr00042856 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction | WBInteraction000328576 | ||||||||
| WBInteraction000359294 | |||||||||
| WBInteraction000473843 | |||||||||
| WBInteraction000541376 | |||||||||
| WBInteraction000575465 | |||||||||
| Map_info | Map | IV | Position | 0.209656 | Error | 0.004986 | |||
| Positive | Positive_clone | Y24D9A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00023856 | ||||||||
| WBPaper00030864 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00064107 | |||||||||
| WBPaper00064543 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
