WormBase Tree Display for Gene: WBGene00021239
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| WBGene00021239 | SMap | S_parent | Sequence | Y20F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y20F4.4 | |||||||
| Molecular_name | Y20F4.4a | ||||||||
| Y20F4.4a.1 | |||||||||
| CE48476 | |||||||||
| Y20F4.4b | |||||||||
| CE49702 | |||||||||
| Y20F4.4b.1 | |||||||||
| Other_name | CELE_Y20F4.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | Y20F4.4 | ||||||||
| DB_info | Database | AceView | gene | 1C602C | |||||
| 1C602 | |||||||||
| WormQTL | gene | WBGene00021239 | |||||||
| WormFlux | gene | WBGene00021239 | |||||||
| NDB | locus_tag | CELE_Y20F4.4 | |||||||
| NCBI | gene | 245999 | |||||||
| RefSeq | protein | NM_001306409.3 | |||||||
| NM_058517.8 | |||||||||
| TrEMBL | UniProtAcc | Q95XA7 | |||||||
| X5LPW2 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95XA7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (153) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP1913 | ||||||||
| Ortholog (17) | |||||||||
| Paralog | WBGene00017288 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00009070 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009374 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016155 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in enteric muscle; germ line; neuronal sheath cell; neurons; and rectal muscle based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and rrf-3 based on tiling array; RNA-seq; and microarray studies. Is affected by silicon dioxide nanoparticle; paraquat; and Sirolimus based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y20F4.4a | |||||||
| Y20F4.4b | |||||||||
| Corresponding_CDS_history | Y20F4.4:wp238 | ||||||||
| Corresponding_transcript | Y20F4.4a.1 | ||||||||
| Y20F4.4b.1 | |||||||||
| Other_sequence | FG349344.1 | ||||||||
| FG352311.1 | |||||||||
| FG347815.1 | |||||||||
| Associated_feature | WBsf982791 | ||||||||
| WBsf982792 | |||||||||
| WBsf219004 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00007422 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055657 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055656 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1039258 | ||||||||
| Expr1159182 | |||||||||
| Expr2007146 | |||||||||
| Expr2025378 | |||||||||
| Drives_construct | WBCnstr00024609 | ||||||||
| Construct_product | WBCnstr00024609 | ||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (113) | |||||||||
| Map_info | Positive | Positive_clone | Y20F4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | -12.2808 | |||||||
| Method | Gene |
