WormBase Tree Display for Gene: WBGene00021224
expand all nodes | collapse all nodes | view schema
WBGene00021224 | SMap | S_parent | Sequence | Y19D10A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | clec-209 | Person_evidence | WBPerson2531 | |||||
Sequence_name | Y19D10A.9 | ||||||||
Molecular_name | Y19D10A.9 | ||||||||
Y19D10A.9.1 | |||||||||
CE17006 | |||||||||
Other_name | CELE_Y19D10A.9 | Accession_evidence | NDB | BX284605 | |||||
Public_name | clec-209 | ||||||||
DB_info | Database | AceView | gene | 5C831 | |||||
WormQTL | gene | WBGene00021224 | |||||||
WormFlux | gene | WBGene00021224 | |||||||
NDB | locus_tag | CELE_Y19D10A.9 | |||||||
NCBI | gene | 178716 | |||||||
RefSeq | protein | NM_071249.1 | |||||||
TREEFAM | TREEFAM_ID | TF317818 | |||||||
TrEMBL | UniProtAcc | G5EBG4 | |||||||
UniProt_GCRP | UniProtAcc | G5EBG4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-209 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | clec | ||||||||
Allele | WBVar01499528 | ||||||||
WBVar01499167 | |||||||||
WBVar01499537 | |||||||||
WBVar01499740 | |||||||||
WBVar02135861 | |||||||||
WBVar02135862 | |||||||||
WBVar01499496 | |||||||||
WBVar01499316 | |||||||||
WBVar01500066 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (28) | |||||||||
Paralog (43) | |||||||||
Structured_description | Automated_description | Enriched in DA neuron; DD neuron; VA neuron; intestine; and neurons based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and dpy-10 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-five chemicals including manganese chloride; D-glucose; and stavudine based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y19D10A.9 | |||||||
Corresponding_transcript | Y19D10A.9.1 | ||||||||
Associated_feature | WBsf231506 | ||||||||
Experimental_info | RNAi_result | WBRNAi00013380 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00098899 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048600 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098900 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048601 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015772 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048599 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020106 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098898 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103281 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1159162 | ||||||||
Drives_construct | WBCnstr00024615 | ||||||||
Construct_product | WBCnstr00024615 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (266) | |||||||||
Interaction | WBInteraction000544672 | ||||||||
Map_info | Map | V | Position | -14.8597 | |||||
Positive | Positive_clone | Y19D10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031002 | ||||||||
WBPaper00031686 | |||||||||
WBPaper00033099 | |||||||||
WBPaper00039120 | |||||||||
WBPaper00060797 | |||||||||
WBPaper00064073 | |||||||||
WBPaper00064841 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |