WormBase Tree Display for Gene: WBGene00021107

WBGene00021107 SMap: S_parent: Sequence: W09B7
  Identity: Version: 1
    Name: Sequence_name: W09B7.2
      Molecular_name: W09B7.2
        W09B7.2.1
        CE21282
      Other_name: W09B7.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_W09B7.2 Accession_evidence: NDB BX284605
      Public_name: W09B7.2
    DB_info: Database: AceView gene 5J305
        WormFlux gene WBGene00021107
        NDB locus_tag CELE_W09B7.2
        NCBI gene 189307
        RefSeq protein NM_072869.1
        TREEFAM TREEFAM_ID TF353686
        TrEMBL UniProtAcc G5ECF6
        UniProt_GCRP UniProtAcc G5ECF6
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (20)
    RNASeq_FPKM (74)
    Ortholog: chrII_pilon.g3602 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrV_pilon.g15092 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00013953 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00015366 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00017186 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Expressed in intestinal cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W09B7.2
    Corresponding_transcript: W09B7.2.1
    Associated_feature: WBsf232156
      WBsf232157
  Experimental_info: RNAi_result: WBRNAi00019740 Inferred_automatically: RNAi_primary
      WBRNAi00043864 Inferred_automatically: RNAi_primary
      WBRNAi00043865 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12636
      Expr1158550
    Drives_construct: WBCnstr00022343
      WBCnstr00024685
    Construct_product: WBCnstr00022343
      WBCnstr00024685
    Microarray_results (23)
    Expression_cluster: WBPaper00036231:long-telomeres_upregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00045303:ZK1236.1(tm4178)_upregulated
      WBPaper00045521:Spermatogenic
      WBPaper00045774:clk-1_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049098:hrde-1(tm1200)-induced_15C
      WBPaper00049098:hrde-1(tm1200)-induced_23C
      WBPaper00049098:hrde-1(tm1200)-induced_p15C
      WBPaper00049377:MWCNT_upregulated
      WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00051305:vit-2(ac3)_downregulated
      WBPaper00052885:hrde-1(tm1200)-emb-4(qm31)_regulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053782:daf-2(RNAi)_oocyte_upregulated
      WBPaper00055354:Allantoin_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055944:C.butyricum_vs_OP50_upregulated
      WBPaper00056275:P.aeruginosa_downregulated
      WBPaper00056275:P.aeruginosa_downregulated_atf-7(qd22qd130)_dependent
      WBPaper00056471:flcn-1(ok975)_downregulated
      WBPaper00056617:adr-1_upregulated_embryo_transcript
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057158:mdt-15(tm2182)_dependent_15C_downregulated
      WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_downregulated_endo-siRNA_targets
      WBPaper00057265:metaformin_downregulated_OP50
      WBPaper00058942:henn-1(pk2295)_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00059605:simr-1(cmp36)_downregulated
      WBPaper00059735:glucose_downregulated_N2
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00059739:hira-1(gk835598)_upregulated_L1
      WBPaper00059739:hira-1(gk835598)_upregulated_L4
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060634:unc-120(st364)_upregulated
      WBPaper00060764:swsn-1(os22ts)_upregulated
      WBPaper00061466:nath-10(icb102)_upregulated
      WBPaper00061753:csr-1(tor159)_upregulated_20C
      WBPaper00061952:daf-18(yh1)_downregulated
      WBPaper00061995:mter-4(syb3662syb3403)_upregulated
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_downregulated_germline
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:etr-1(lq61)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00064850:glh-1(sam65)_upregulated
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065005:sams-4(RNAi)_upregulated
      WBPaper00065074:glna(-)_downregulated
      WBPaper00065392:Lb.delbrueckii_upregulated
      WBPaper00065392:Lb.gasseri_upregulated
      WBPaper00065392:Lb.plantarum_upregulated
      WBPaper00065392:Lb.rhamnosus_upregulated
      WBPaper00065392:P.pentosaceus_upregulated
      WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
      WBPaper00065759:dot-1.1(knu339)_upregulated
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00066110:Cisplatin_downregulated_diploid
      WBPaper00066163:crtc-1(wbm18)_downregulated_set-2(ok952)
      WBPaper00066163:set-2(ok952)_upregulated_N2
      cgc4489_group_1
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00027111:rde-3(ne298)_upregulated
      WBPaper00028483:Up_mes-4_vs_WT
      WBPaper00031060:2-deoxy-D-glucose_upregulated
      WBPaper00031477:Up_deps-1_vs_WT
      WBPaper00031832:slr-2_regulated
      WBPaper00034661:AgNPs_upregulated
      WBPaper00035873:osm-7_regulated
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00036429:glp-1(oz112)_upregulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040184:hcf-1down_sir-2.1down_daf-2nc
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.5
      WBPaper00040823:alg-1(gk214)_upregulated
      WBPaper00040876:mir-35_upregulated
      WBPaper00041174:environmental
      WBPaper00041174:genotype_environment_interaction
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00042128:gei-8(ok1671)_upregulated
      WBPaper00042236:flcn-1(ok975)_upregulated
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00046083:oga-1(ok1207)_OP50_downregulated
      WBPaper00046083:ogt-1(ok1474)_OP50_downregulated
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      WBPaper00050407:hsp-6(RNAi)_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(41_min)
      [cgc5767]:expression_class_E_pi(41_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(PC32)
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
    Interaction: WBInteraction000571021
      WBInteraction000581197
  Map_info: Positive: Positive_clone: W09B7 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 1.63102
  Method: Gene