WormBase Tree Display for Gene: WBGene00021063
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| WBGene00021063 | SMap | S_parent | Sequence | W06E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sbds-1 | Person_evidence | WBPerson8131 | |||||
| Sequence_name | W06E11.4 | ||||||||
| Molecular_name (3) | |||||||||
| Other_name | W06E11.c | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_W06E11.4 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | sbds-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jun 2008 11:48:40 | WBPerson2970 | Name_change | CGC_name | sbds-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sbds | ||||||||
| Allele (41) | |||||||||
| Strain | WBStrain00051204 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00077608 | ||||||||
| 00077609 | |||||||||
| 00077610 | |||||||||
| 00077611 | |||||||||
| 00077612 | |||||||||
| 00077613 | |||||||||
| 00077614 | |||||||||
| 00077615 | |||||||||
| 00125534 | |||||||||
| 00125535 | |||||||||
| Contained_in_operon | CEOP3028 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description | Concise_description | W06E11.4 encodes an ortholog of human SBDS (OMIM:607444, mutated in Shwachman-Bodian-Diamond syndrome) and S. cerevisiae Sdo1p, that is required for the extended lifespan of daf-2(e1370) mutants; W06E11.4 is expressed ubiquitously (or nearly so) in somatic larval and adult tissues; by orthology with yeast Sdo1p, W06E11.4 is predicted to be a nucleolar protein required for maturation of 60S ribosomal subunits; W06E11.4 shares an operon with tag-266 and T19C3.7. | Paper_evidence | WBPaper00028829 | |||||
| WBPaper00028832 | |||||||||
| WBPaper00028833 | |||||||||
| WBPaper00028836 | |||||||||
| WBPaper00031212 | |||||||||
| WBPaper00032020 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 24 Jul 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in cytosolic ribosome assembly. Predicted to be located in cytoplasm; nuclear lumen; and spindle. Human ortholog(s) of this gene implicated in Shwachman-Diamond syndrome and aplastic anemia. Is an ortholog of human SBDS (SBDS ribosome maturation factor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:12449 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19440) | ||||
| DOID:0060479 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19440) | ||||||
| Molecular_info | Corresponding_CDS | W06E11.4 | |||||||
| Corresponding_transcript | W06E11.4.1 | ||||||||
| Other_sequence | AW626571.1 | ||||||||
| Tcol_isotig00942 | |||||||||
| PPC08400_1 | |||||||||
| AW257633.1 | |||||||||
| OVC00315_1 | |||||||||
| EX536428.1 | |||||||||
| Tcol_isotig00951 | |||||||||
| CJC00729_1 | |||||||||
| Oden_isotig06719 | |||||||||
| EY460479.1 | |||||||||
| NB06672 | |||||||||
| EY466003.1 | |||||||||
| OVC06529_1 | |||||||||
| JI223229.1 | |||||||||
| HCC10868_1 | |||||||||
| Dviv_isotig22373 | |||||||||
| PVC01524_1 | |||||||||
| Dviv_isotig22801 | |||||||||
| Dviv_isotig22374 | |||||||||
| EL889531.1 | |||||||||
| Oden_isotig06717 | |||||||||
| Tcol_isotig00941 | |||||||||
| Tcol_isotig00948 | |||||||||
| CV201145.1 | |||||||||
| PSC00269_1 | |||||||||
| Tcol_isotig00949 | |||||||||
| JI171533.1 | |||||||||
| Tcol_isotig00947 | |||||||||
| PPC06019_1 | |||||||||
| Tcol_isotig00944 | |||||||||
| FC540270.1 | |||||||||
| Oden_isotig06715 | |||||||||
| Oden_isotig29298 | |||||||||
| SR01570 | |||||||||
| HG02740 | |||||||||
| MIC00984_1 | |||||||||
| NBC00724_2 | |||||||||
| NB07099 | |||||||||
| Tcol_isotig00945 | |||||||||
| MI04072 | |||||||||
| SRC00573_1 | |||||||||
| AA618731.1 | |||||||||
| ACC05711_1 | |||||||||
| Hbac_isotig05540 | |||||||||
| GO249103.1 | |||||||||
| PPC02806_1 | |||||||||
| EX827810.1 | |||||||||
| Tcir_isotig20794 | |||||||||
| CR03858 | |||||||||
| Tcir_isotig14747 | |||||||||
| Tcir_isotig03393 | |||||||||
| FC542849.1 | |||||||||
| MI01547 | |||||||||
| Oden_isotig06716 | |||||||||
| ACC34831_1 | |||||||||
| BE638335.1 | |||||||||
| MIC07661_1 | |||||||||
| BE209053.1 | |||||||||
| HCC02975_1 | |||||||||
| EX555752.1 | |||||||||
| ACC05711_2 | |||||||||
| BMC08618_1 | |||||||||
| JI469667.1 | |||||||||
| ACC14369_1 | |||||||||
| FC809865.1 | |||||||||
| NBC00724_1 | |||||||||
| RS09961 | |||||||||
| EY466456.1 | |||||||||
| EY470474.1 | |||||||||
| Tcir_isotig03392 | |||||||||
| HGC03078_1 | |||||||||
| HO652385.1 | |||||||||
| CRC06021_1 | |||||||||
| RSC01893_1 | |||||||||
| MI08271 | |||||||||
| FC815221.1 | |||||||||
| Oden_isotig06718 | |||||||||
| EX536461.1 | |||||||||
| Oden_isotig06714 | |||||||||
| Tcol_isotig00950 | |||||||||
| HC02142 | |||||||||
| EY467662.1 | |||||||||
| CBC02010_1 | |||||||||
| AW208343.1 | |||||||||
| GW406002.1 | |||||||||
| Tcol_isotig00946 | |||||||||
| Tcol_isotig00943 | |||||||||
| BXC04172_1 | |||||||||
| BF727575.1 | |||||||||
| JI479848.1 | |||||||||
| Acan_isotig09016 | |||||||||
| Associated_feature | WBsf226118 | ||||||||
| WBsf226119 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1013363 | ||||||||
| Expr1039189 | |||||||||
| Expr1158436 | |||||||||
| Expr2015610 | |||||||||
| Expr2033845 | |||||||||
| Drives_construct | WBCnstr00024700 | ||||||||
| Construct_product | WBCnstr00024700 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (115) | |||||||||
| Interaction (47) | |||||||||
| Map_info | Map | III | Position | -26.4304 | Error | 0.009723 | |||
| Positive | Positive_clone | W06E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030887 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
