WormBase Tree Display for Gene: WBGene00021063
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WBGene00021063 | SMap | S_parent | Sequence | W06E11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | sbds-1 | Person_evidence | WBPerson8131 | |||||
Sequence_name | W06E11.4 | ||||||||
Molecular_name | W06E11.4 | ||||||||
W06E11.4.1 | |||||||||
CE30118 | |||||||||
Other_name | W06E11.c | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_W06E11.4 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | sbds-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 04 Jun 2008 11:48:40 | WBPerson2970 | Name_change | CGC_name | sbds-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sbds | ||||||||
Allele (41) | |||||||||
Strain | WBStrain00051204 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (10) | |||||||||
Contained_in_operon | CEOP3028 | ||||||||
Ortholog (36) | |||||||||
Structured_description | Concise_description | W06E11.4 encodes an ortholog of human SBDS (OMIM:607444, mutated in Shwachman-Bodian-Diamond syndrome) and S. cerevisiae Sdo1p, that is required for the extended lifespan of daf-2(e1370) mutants; W06E11.4 is expressed ubiquitously (or nearly so) in somatic larval and adult tissues; by orthology with yeast Sdo1p, W06E11.4 is predicted to be a nucleolar protein required for maturation of 60S ribosomal subunits; W06E11.4 shares an operon with tag-266 and T19C3.7. | Paper_evidence | WBPaper00028829 | |||||
WBPaper00028832 | |||||||||
WBPaper00028833 | |||||||||
WBPaper00028836 | |||||||||
WBPaper00031212 | |||||||||
WBPaper00032020 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 24 Jul 2008 00:00:00 | ||||||||
Automated_description | Predicted to be involved in cytosolic ribosome assembly. Predicted to be located in cytoplasm; nuclear lumen; and spindle. Human ortholog(s) of this gene implicated in Shwachman-Diamond syndrome and aplastic anemia. Is an ortholog of human SBDS (SBDS ribosome maturation factor). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:12449 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19440) | ||||
DOID:0060479 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19440) | ||||||
Molecular_info | Corresponding_CDS | W06E11.4 | |||||||
Corresponding_transcript | W06E11.4.1 | ||||||||
Other_sequence | AW626571.1 | ||||||||
Tcol_isotig00942 | |||||||||
PPC08400_1 | |||||||||
AW257633.1 | |||||||||
OVC00315_1 | |||||||||
EX536428.1 | |||||||||
Tcol_isotig00951 | |||||||||
CJC00729_1 | |||||||||
Oden_isotig06719 | |||||||||
EY460479.1 | |||||||||
NB06672 | |||||||||
EY466003.1 | |||||||||
OVC06529_1 | |||||||||
JI223229.1 | |||||||||
HCC10868_1 | |||||||||
Dviv_isotig22373 | |||||||||
PVC01524_1 | |||||||||
Dviv_isotig22801 | |||||||||
Dviv_isotig22374 | |||||||||
EL889531.1 | |||||||||
Oden_isotig06717 | |||||||||
Tcol_isotig00941 | |||||||||
Tcol_isotig00948 | |||||||||
CV201145.1 | |||||||||
PSC00269_1 | |||||||||
Tcol_isotig00949 | |||||||||
JI171533.1 | |||||||||
Tcol_isotig00947 | |||||||||
PPC06019_1 | |||||||||
Tcol_isotig00944 | |||||||||
FC540270.1 | |||||||||
Oden_isotig06715 | |||||||||
Oden_isotig29298 | |||||||||
SR01570 | |||||||||
HG02740 | |||||||||
MIC00984_1 | |||||||||
NBC00724_2 | |||||||||
NB07099 | |||||||||
Tcol_isotig00945 | |||||||||
MI04072 | |||||||||
SRC00573_1 | |||||||||
AA618731.1 | |||||||||
ACC05711_1 | |||||||||
Hbac_isotig05540 | |||||||||
GO249103.1 | |||||||||
PPC02806_1 | |||||||||
EX827810.1 | |||||||||
Tcir_isotig20794 | |||||||||
CR03858 | |||||||||
Tcir_isotig14747 | |||||||||
Tcir_isotig03393 | |||||||||
FC542849.1 | |||||||||
MI01547 | |||||||||
Oden_isotig06716 | |||||||||
ACC34831_1 | |||||||||
BE638335.1 | |||||||||
MIC07661_1 | |||||||||
BE209053.1 | |||||||||
HCC02975_1 | |||||||||
EX555752.1 | |||||||||
ACC05711_2 | |||||||||
BMC08618_1 | |||||||||
JI469667.1 | |||||||||
ACC14369_1 | |||||||||
FC809865.1 | |||||||||
NBC00724_1 | |||||||||
RS09961 | |||||||||
EY466456.1 | |||||||||
EY470474.1 | |||||||||
Tcir_isotig03392 | |||||||||
HGC03078_1 | |||||||||
HO652385.1 | |||||||||
CRC06021_1 | |||||||||
RSC01893_1 | |||||||||
MI08271 | |||||||||
FC815221.1 | |||||||||
Oden_isotig06718 | |||||||||
EX536461.1 | |||||||||
Oden_isotig06714 | |||||||||
Tcol_isotig00950 | |||||||||
HC02142 | |||||||||
EY467662.1 | |||||||||
CBC02010_1 | |||||||||
AW208343.1 | |||||||||
GW406002.1 | |||||||||
Tcol_isotig00946 | |||||||||
Tcol_isotig00943 | |||||||||
BXC04172_1 | |||||||||
BF727575.1 | |||||||||
JI479848.1 | |||||||||
Acan_isotig09016 | |||||||||
Associated_feature | WBsf226118 | ||||||||
WBsf226119 | |||||||||
Experimental_info | RNAi_result (12) | ||||||||
Expr_pattern | Expr1013363 | ||||||||
Expr1039189 | |||||||||
Expr1158436 | |||||||||
Expr2015610 | |||||||||
Expr2033845 | |||||||||
Drives_construct | WBCnstr00024700 | ||||||||
Construct_product | WBCnstr00024700 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (115) | |||||||||
Interaction (47) | |||||||||
Map_info | Map | III | Position | -26.4304 | Error | 0.009723 | |||
Positive | Positive_clone | W06E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00030887 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |