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WormBase Tree Display for Gene: WBGene00020938

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Name Class

WBGene00020938SMapS_parentSequenceW02D7
IdentityVersion3
NameCGC_nameclec-218Person_evidenceWBPerson2531
Sequence_nameW02D7.2
Molecular_nameW02D7.2
W02D7.2.1
CE41941
Other_nameCELE_W02D7.2Accession_evidenceNDBBX284605
Public_nameclec-218
DB_infoDatabaseAceViewgene5I791
WormQTLgeneWBGene00020938
WormFluxgeneWBGene00020938
NDBlocus_tagCELE_W02D7.2
PanthergeneCAEEL|WormBase=WBGene00020938|UniProtKB=Q4W528
familyPTHR31024
NCBIgene189114
RefSeqproteinNM_072746.7
TREEFAMTREEFAM_IDTF317104
TrEMBLUniProtAccQ4W528
UniProt_GCRPUniProtAccQ4W528
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
210 May 2005 10:52:40WBPerson1867EventSplit_intoWBGene00044341
309 Oct 2007 15:40:27WBPerson2970Name_changeCGC_nameclec-218
Split_intoWBGene00044341
WBGene00044356
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (46)
RNASeq_FPKM (74)
GO_annotation00081000
OrthologWBGene00024565Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WBGene00142482Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00131322Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00053057Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00097188Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00109123Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00098882Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00093171Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00111723Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00092267Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00110964Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00108103Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00103848Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00111777Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00108491Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00111481Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00111718Pristionchus pacificusFrom_analysisInparanoid_8
CBOVI.g1470Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g14333Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4083Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17051Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g16951Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g10185Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g16143Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24504Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g18961Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g22257Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02647.g27380Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03603Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018817Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01378Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04676Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08072Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12105Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12107Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11472Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18412Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18481Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g2155Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g23296Panagrellus redivivusFrom_analysisWormBase-Compara
chrV_pilon.g14961Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00095459Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00096168Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00115326Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00283764Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00259015Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00263770Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00267716Strongyloides rattiFrom_analysisWormBase-Compara
Paralog (13)
Structured_descriptionAutomated_descriptionInvolved in defense response to Gram-positive bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW02D7.2
Corresponding_CDS_historyW02D7.2:wp143
W02D7.2:wp185
Corresponding_transcriptW02D7.2.1
Other_sequenceOden_isotig17758
Associated_featureWBsf232090
WBsf232091
Experimental_infoRNAi_resultWBRNAi00054597Inferred_automaticallyRNAi_primary
Expr_patternExpr1026279
Expr1158142
Expr2010126
Expr2028367
Drives_constructWBCnstr00024773
Construct_productWBCnstr00024773
Microarray_results (17)
Expression_cluster (268)
InteractionWBInteraction000163664
WBInteraction000242534
WBInteraction000364713
WBInteraction000370909
WBInteraction000371881
WBInteraction000393250
WBInteraction000428951
WBInteraction000438003
WBInteraction000442831
WBInteraction000451738
Map_infoMapVPosition1.27822Error0.002152
PositivePositive_cloneW02D7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00058665
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene