WormBase Tree Display for Gene: WBGene00020919
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| WBGene00020919 | SMap | S_parent | Sequence | W01C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-19 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | W01C8.3 | ||||||||
| Molecular_name | W01C8.3 | ||||||||
| W01C8.3.1 | |||||||||
| CE53515 | |||||||||
| Other_name | CELE_W01C8.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | set-19 | ||||||||
| DB_info | Database | AceView | gene | XG294 | |||||
| WormQTL | gene | WBGene00020919 | |||||||
| WormFlux | gene | WBGene00020919 | |||||||
| NDB | locus_tag | CELE_W01C8.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020919|UniProtKB=Q9GYG8 | |||||||
| family | PTHR47250 | ||||||||
| NCBI | gene | 180834 | |||||||
| RefSeq | protein | NM_001392778.1 | |||||||
| TREEFAM | TREEFAM_ID | TF321419 | |||||||
| TrEMBL | UniProtAcc | Q9GYG8 | |||||||
| UniProt_GCRP | UniProtAcc | Q9GYG8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-19 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (76) | |||||||||
| Strain | WBStrain00032213 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOPX162 | ||||||||
| Ortholog (24) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | set-19 encodes a SET domain-containing protein; SET-19 has no non-nematode orthologs, but several paralogs (SET-6, SET-13, SET-15, SET-20, SET-21, and SET-32); neither set-19(ok1813) nor set-19(RNAi) have any obvious phenotypes. | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Expressed in hypodermis. Is predicted to encode a protein with the following domains: SET domain superfamily and SET domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W01C8.3 | |||||||
| Corresponding_CDS_history | W01C8.3:wp128 | ||||||||
| W01C8.3:wp272 | |||||||||
| Corresponding_transcript | W01C8.3.1 | ||||||||
| Associated_feature | WBsf670543 | ||||||||
| WBsf1005340 | |||||||||
| WBsf1005341 | |||||||||
| WBsf237394 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019458 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091496 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054513 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14379 | ||||||||
| Expr1012550 | |||||||||
| Expr1039114 | |||||||||
| Expr1158059 | |||||||||
| Expr2015763 | |||||||||
| Expr2033996 | |||||||||
| Drives_construct | WBCnstr00024787 | ||||||||
| Construct_product | WBCnstr00024787 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction | WBInteraction000172725 | ||||||||
| WBInteraction000211593 | |||||||||
| WBInteraction000221586 | |||||||||
| WBInteraction000260057 | |||||||||
| WBInteraction000275856 | |||||||||
| WBInteraction000278532 | |||||||||
| WBInteraction000290593 | |||||||||
| WBInteraction000293844 | |||||||||
| WBInteraction000308359 | |||||||||
| WBInteraction000310770 | |||||||||
| WBInteraction000335255 | |||||||||
| WBInteraction000344478 | |||||||||
| WBInteraction000350261 | |||||||||
| WBInteraction000359293 | |||||||||
| WBInteraction000360948 | |||||||||
| WBInteraction000365041 | |||||||||
| WBInteraction000375006 | |||||||||
| WBInteraction000378483 | |||||||||
| WBInteraction000379082 | |||||||||
| WBInteraction000380951 | |||||||||
| WBInteraction000381096 | |||||||||
| WBInteraction000388986 | |||||||||
| WBInteraction000400056 | |||||||||
| WBInteraction000402781 | |||||||||
| WBInteraction000412638 | |||||||||
| WBInteraction000414856 | |||||||||
| WBInteraction000415637 | |||||||||
| WBInteraction000417080 | |||||||||
| WBInteraction000423182 | |||||||||
| WBInteraction000439253 | |||||||||
| WBInteraction000441997 | |||||||||
| WBInteraction000444457 | |||||||||
| WBInteraction000446146 | |||||||||
| WBInteraction000451318 | |||||||||
| Map_info | Map | X | Position | -4.40389 | Error | 0.00208 | |||
| Positive | Positive_clone | W01C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030864 | ||||||||
| WBPaper00036383 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00064543 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
