WormBase Tree Display for Gene: WBGene00020915

WBGene00020915 SMap: S_parent: Sequence: W01B11
  Identity: Version: 3
    Name: CGC_name: nol-58 Person_evidence: WBPerson3772
            WBPerson38007
      Sequence_name: W01B11.3
      Molecular_name: W01B11.3
        W01B11.3.1
        CE18307
      Other_name: nol-5 Person_evidence: WBPerson3772
        CELE_W01B11.3 Accession_evidence: NDB BX284601
      Public_name: nol-58
    DB_info: Database: AceView gene 1D835
        WormQTL gene WBGene00020915
        WormFlux gene WBGene00020915
        NDB locus_tag CELE_W01B11.3
        Panther gene CAEEL|WormBase=WBGene00020915|UniProtKB=O45012
          family PTHR10894
        NCBI gene 171901
        RefSeq protein NM_001393196.1
        TREEFAM TREEFAM_ID TF105688
        TrEMBL UniProtAcc O45012
        UniProt_GCRP UniProtAcc O45012
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 17 Aug 2007 14:29:26 WBPerson2970 Name_change: CGC_name: nol-5
        3 01 Aug 2017 12:58:54 WBPerson2970 Name_change: CGC_name: nol-58
                Other_name: nol-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nol
    Allele (38)
    RNASeq_FPKM (74)
    GO_annotation: 00033797
      00033798
      00033799
      00033800
      00033801
      00033802
      00125433
      00125434
      00125435
    Ortholog (37)
    Paralog: WBGene00010627 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable snoRNA binding activity. Predicted to be involved in ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex and small-subunit processome. Is an ortholog of human NOP58 (NOP58 ribonucleoprotein). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W01B11.3
    Corresponding_transcript: W01B11.3.1
    Other_sequence: FK804643.1
      FG620154.1
      SSC02825_1
      FC554651.1
      Tcol_isotig08627
      SC00190
      ES562114.1
      MPC00112_1
      FD516628.1
      ACC39948_1
      GR977160.1
      FK808627.1
      EX538342.1
      PSC01504_1
      Oden_isotig18962
      FK807361.1
      ASC18844_1
      GR978048.1
      FG619773.1
      ES563802.1
      GR978183.1
      ACC06297_1
      HGC08314_1
      EX557032.1
      ES738980.1
      AS00944
      ODC00189_1
      GR978328.1
      PP00451
      FC546301.1
      HG11213
      EX502276.1
      ES568127.1
      CR02568
      Tcir_isotig01415
      EX013406.1
      HG11038
      MJ03076
      EE724164.1
      Hbac_isotig01249
      FK800103.1
      PP01416
      AIC00328_1
      Tcol_isotig08628
      EY465641.1
      MC02264
      EX557560.1
      ES744141.1
      EX536517.1
      CSC01058_1
      MCC02678_1
      EX014380.1
      Acan_isotig19880
      HCC06512_1
      GP01544
      OVC07600_1
      HC05073
      Tcir_isotig19071
      GW412120.1
      EH005168.1
      FG620159.1
      ASC25437_1
      HBC04369_1
      ACC10952_1
      DA00860
      CJC02792_1
      AM157894.1
      EX009040.1
      DAC01346_1
      CRC03340_1
      GO251061.1
      MP00988
      BE720971.1
      EE724163.1
      AS15623
      PPC04000_1
      FC546092.1
      Acan_isotig09082
      EX562870.1
      EY459947.1
      ES413773.1
      PPC01251_1
      PTC01390_1
      BMC00568_1
      JO474334.1
      CGC00741_1
      Tcir_isotig07256
      DA00861
      CJC09987_1
      Dviv_isotig24934
      ASC26041_1
      MJC02090_1
      GR979309.1
      FG977760.1
      GR14348
      AS17843
      SS01943
      EX502024.1
      TSC07159_1
      FC546040.1
      JI170534.1
      PPC02686_1
      GRC00574_1
      EW742015.1
      EX913868.1
      FC543937.1
      ES568073.1
      EY467257.1
      PT01988
      GR978481.1
    Associated_feature: WBsf643138
      WBsf654777
      WBsf656109
      WBsf217383
      WBsf217384
      WBsf217385
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr1021656
      Expr1039113
      Expr1158046
      Expr2014350
      Expr2032591
    Drives_construct: WBCnstr00024789
    Construct_product: WBCnstr00024789
    Microarray_results (21)
    Expression_cluster (185)
    Interaction (338)
  Map_info: Map: I Position: -4.10031 Error: 0.026225
    Positive: Positive_clone: W01B11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029435
    WBPaper00031019
    WBPaper00032197
    WBPaper00038491
    WBPaper00055090
    WBPaper00062599
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene