WormBase Tree Display for Gene: WBGene00020890

WBGene00020890 SMap: S_parent: Sequence: T28C12
  Identity: Version: 2
    Name: CGC_name: fbxa-202 Person_evidence: WBPerson655
      Sequence_name: T28C12.3
      Molecular_name: T28C12.3
        T28C12.3.1
        CE52971
      Other_name: CELE_T28C12.3 Accession_evidence: NDB BX284605
      Public_name: fbxa-202
    DB_info: Database: AceView gene 5G807
        WormQTL gene WBGene00020890
        WormFlux gene WBGene00020890
        NDB locus_tag CELE_T28C12.3
        Panther gene CAEEL|WormBase=WBGene00020890|UniProtKB=O16696
          family PTHR23015
        NCBI gene 189038
        RefSeq protein NM_072214.3
        TREEFAM TREEFAM_ID TF322479
        TrEMBL UniProtAcc O16696
        UniProt_GCRP UniProtAcc O16696
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 01 Mar 2007 11:55:19 WBPerson2970 Name_change: CGC_name: fbxa-202
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (30)
    RNASeq_FPKM (74)
    Ortholog (13)
    Paralog (220)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in male based on RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray; RNA-seq; and tiling array studies. Is affected by twelve chemicals including methylmercuric chloride; manganese chloride; and D-glucose based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T28C12.3
    Corresponding_CDS_history: T28C12.3:wp270
    Corresponding_transcript: T28C12.3.1
    Associated_feature: WBsf231869
  Experimental_info: RNAi_result: WBRNAi00019383 Inferred_automatically: RNAi_primary
      WBRNAi00054389 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1157937
      Expr2011516
      Expr2029753
    Drives_construct: WBCnstr00024807
    Construct_product: WBCnstr00024807
    Microarray_results (13)
    Expression_cluster (121)
    Interaction (64)
  Map_info: Map: V Position: -0.183046 Error: 0.001133
    Positive: Positive_clone: T28C12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene