WormBase Tree Display for Gene: WBGene00020886
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| WBGene00020886 | SMap | S_parent | Sequence | T28B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ttr-6 | |||||||
| Sequence_name | T28B4.3 | ||||||||
| Molecular_name | T28B4.3 | ||||||||
| T28B4.3.1 | |||||||||
| CE14325 | |||||||||
| Other_name | CELE_T28B4.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ttr-6 | ||||||||
| DB_info | Database | AceView | gene | XH214 | |||||
| WormQTL | gene | WBGene00020886 | |||||||
| WormFlux | gene | WBGene00020886 | |||||||
| NDB | locus_tag | CELE_T28B4.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020886|UniProtKB=O17345 | |||||||
| family | PTHR21700 | ||||||||
| NCBI | gene | 189028 | |||||||
| RefSeq | protein | NM_076709.6 | |||||||
| TREEFAM | TREEFAM_ID | TF315773 | |||||||
| TrEMBL | UniProtAcc | O17345 | |||||||
| UniProt_GCRP | UniProtAcc | O17345 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 Sep 2007 11:48:01 | WBPerson2970 | Name_change | CGC_name | ttr-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ttr | ||||||||
| Allele (13) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00029646 | ||||||||
| 00029647 | |||||||||
| 00125408 | |||||||||
| Ortholog (25) | |||||||||
| Paralog (62) | |||||||||
| Structured_description | Automated_description | Located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T28B4.3 | |||||||
| Corresponding_transcript | T28B4.3.1 | ||||||||
| Other_sequence (99) | |||||||||
| Associated_feature (2) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00054380 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00081190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036069 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019381 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081194 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9506 | ||||||||
| Expr1016353 | |||||||||
| Expr1039100 | |||||||||
| Expr1157928 | |||||||||
| Expr2017625 | |||||||||
| Expr2035765 | |||||||||
| Drives_construct | WBCnstr00024811 | ||||||||
| Construct_product | WBCnstr00014071 | ||||||||
| WBCnstr00024811 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (224) | |||||||||
| Interaction | WBInteraction000182593 | ||||||||
| WBInteraction000204123 | |||||||||
| WBInteraction000204875 | |||||||||
| WBInteraction000204907 | |||||||||
| WBInteraction000206047 | |||||||||
| WBInteraction000224478 | |||||||||
| WBInteraction000240064 | |||||||||
| WBInteraction000254626 | |||||||||
| WBInteraction000255356 | |||||||||
| WBInteraction000260195 | |||||||||
| WBInteraction000287049 | |||||||||
| WBInteraction000299967 | |||||||||
| WBInteraction000304059 | |||||||||
| WBInteraction000324342 | |||||||||
| WBInteraction000329654 | |||||||||
| WBInteraction000343716 | |||||||||
| WBInteraction000361973 | |||||||||
| WBInteraction000364413 | |||||||||
| WBInteraction000364437 | |||||||||
| WBInteraction000375705 | |||||||||
| WBInteraction000382074 | |||||||||
| WBInteraction000390903 | |||||||||
| WBInteraction000394161 | |||||||||
| WBInteraction000394484 | |||||||||
| WBInteraction000417340 | |||||||||
| WBInteraction000424560 | |||||||||
| WBInteraction000444262 | |||||||||
| WBInteraction000449226 | |||||||||
| Map_info | Map | X | Position | -2.751 | |||||
| Positive | Positive_clone | T28B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00034662 | ||||||||
| WBPaper00038444 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
