WormBase Tree Display for Gene: WBGene00020851
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WBGene00020851 | SMap | S_parent | Sequence | T27B7 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | nhr-227 | Person_evidence | WBPerson600 | |||
Sequence_name | T27B7.5 | ||||||
Molecular_name | T27B7.5a | ||||||
T27B7.5a.1 | |||||||
CE52889 | |||||||
T27B7.5b | |||||||
Other_name | CELE_T27B7.5 | Accession_evidence | NDB | BX284605 | |||
Public_name | nhr-227 | ||||||
DB_info | Database | AceView | gene | 5C765 | |||
WormQTL | gene | WBGene00020851 | |||||
WormFlux | gene | WBGene00020851 | |||||
NDB | locus_tag | CELE_T27B7.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00020851|UniProtKB=G4SR04 | |||||
family | PTHR45680 | ||||||
NCBI | gene | 188976 | |||||
RefSeq | protein | NM_001269084.4 | |||||
NR_133583.2 | |||||||
TrEMBL | UniProtAcc | G4SR04 | |||||
UniProt_GCRP | UniProtAcc | G4SR04 | |||||
RNAcentral | URSid | URS0000E60BDE | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nhr | ||||||
Allele (60) | |||||||
Strain | WBStrain00036484 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00009341 | ||||||
00009342 | |||||||
00009343 | |||||||
00125395 | |||||||
00125396 | |||||||
00125397 | |||||||
00125398 | |||||||
Ortholog (20) | |||||||
Paralog (217) | |||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T27B7.5a | |||||
Corresponding_CDS_history | T27B7.5:wp197 | ||||||
T27B7.5:wp211 | |||||||
T27B7.5a:wp268 | |||||||
T27B7.5b:wp250 | |||||||
Corresponding_transcript | T27B7.5b | ||||||
T27B7.5a.1 | |||||||
Corresponding_transcript_history | T27B7.5b:wp268 | ||||||
Other_sequence | MCC01034_1 | ||||||
CBC10509_1 | |||||||
FD516872.1 | |||||||
CSC01557_1 | |||||||
MC02389 | |||||||
MH04413 | |||||||
MI00400 | |||||||
Associated_feature | WBsf661001 | ||||||
WBsf978449 | |||||||
WBsf231498 | |||||||
WBsf231499 | |||||||
Transcription_factor | WBTranscriptionFactor000789 | ||||||
Experimental_info | RNAi_result | WBRNAi00054277 | Inferred_automatically | RNAi_primary | |||
WBRNAi00091039 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00019311 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1021189 | ||||||
Expr1157827 | |||||||
Expr2014128 | |||||||
Expr2032367 | |||||||
Drives_construct | WBCnstr00024838 | ||||||
Construct_product | WBCnstr00024838 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (37) | |||||||
SAGE_tag | SAGE:ttatcagatt | Strand | Sense | ||||
Unambiguously_mapped | |||||||
SAGE:agatctgcca | Strand | Antisense | |||||
SAGE:tttggagcaa | Strand | Sense | |||||
Unambiguously_mapped | |||||||
SAGE:aaagttaaca | Strand | Sense | |||||
Unambiguously_mapped | |||||||
SAGE:aatgttgatt | Strand | Antisense | |||||
SAGE:ctctacaagt | Strand | Antisense | |||||
SAGE:ttcgctcaac | Strand | Sense | |||||
Unambiguously_mapped | |||||||
Interaction | WBInteraction000187095 | ||||||
Map_info | Map | V | Position | -14.9871 | Error | 0.005473 | |
Positive | Positive_clone | T27B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |