WormBase Tree Display for Gene: WBGene00020843
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| WBGene00020843 | SMap | S_parent | Sequence | T27A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nse-1 | Paper_evidence | WBPaper00064341 | |||||
| Person_evidence | WBPerson11313 | ||||||||
| Laboratory_evidence | TG | ||||||||
| Sequence_name | T27A3.7 | ||||||||
| Molecular_name | T27A3.7 | ||||||||
| T27A3.7.1 | |||||||||
| CE14229 | |||||||||
| Other_name | T27A3.7 | ||||||||
| CELE_T27A3.7 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | nse-1 | ||||||||
| DB_info | Database | AceView | gene | 1G684 | |||||
| WormQTL | gene | WBGene00020843 | |||||||
| WormFlux | gene | WBGene00020843 | |||||||
| NDB | locus_tag | CELE_T27A3.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020843|UniProtKB=P91501 | |||||||
| family | PTHR20973 | ||||||||
| NCBI | gene | 172295 | |||||||
| RefSeq | protein | NM_059363.6 | |||||||
| TREEFAM | TREEFAM_ID | TF314721 | |||||||
| TrEMBL | UniProtAcc | P91501 | |||||||
| UniProt_GCRP | UniProtAcc | P91501 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Oct 2022 15:59:20 | WBPerson21950 | Name_change | CGC_name | nse-1 | ||||
| Other_name | T27A3.7 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nse | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00051205 | ||||||||
| 00051206 | |||||||||
| 00051207 | |||||||||
| 00051208 | |||||||||
| 00051209 | |||||||||
| 00051210 | |||||||||
| 00125385 | |||||||||
| 00125386 | |||||||||
| Contained_in_operon | CEOP1300 | ||||||||
| Ortholog (27) | |||||||||
| Structured_description | Automated_description | Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be located in nucleus. Predicted to be part of Smc5-Smc6 complex. Is an ortholog of human NSMCE1 (NSE1 homolog, SMC5-SMC6 complex component). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T27A3.7 | |||||||
| Corresponding_transcript | T27A3.7.1 | ||||||||
| Other_sequence | CRC01247_1 | ||||||||
| CR11696 | |||||||||
| CR11697 | |||||||||
| CBC12876_1 | |||||||||
| Associated_feature | WBsf649220 | ||||||||
| WBsf219543 | |||||||||
| WBsf219544 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00061645 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036017 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054265 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022696 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004320 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017843 | ||||||||
| Expr1039086 | |||||||||
| Expr1157812 | |||||||||
| Expr2006561 | |||||||||
| Expr2024777 | |||||||||
| Drives_construct | WBCnstr00024843 | ||||||||
| Construct_product | WBCnstr00024843 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction | WBInteraction000346275 | ||||||||
| WBInteraction000362735 | |||||||||
| WBInteraction000402833 | |||||||||
| WBInteraction000425787 | |||||||||
| WBInteraction000437579 | |||||||||
| WBInteraction000445771 | |||||||||
| WBInteraction000586802 | |||||||||
| WBInteraction000586803 | |||||||||
| WBInteraction000586804 | |||||||||
| WBInteraction000586806 | |||||||||
| Map_info | Map | I | Position | 0.784829 | |||||
| Positive | Positive_clone | T27A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00064341 | ||||||||
| WBPaper00065893 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
