WormBase Tree Display for Gene: WBGene00020463
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| WBGene00020463 | SMap | S_parent | Sequence | T12E12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cec-6 | Person_evidence | WBPerson437 | |||||
| Sequence_name | T12E12.2 | ||||||||
| Molecular_name | T12E12.2 | ||||||||
| T12E12.2.1 | |||||||||
| CE13585 | |||||||||
| Other_name | CELE_T12E12.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cec-6 | ||||||||
| DB_info | Database | AceView | gene | 4G311 | |||||
| WormQTL | gene | WBGene00020463 | |||||||
| WormFlux | gene | WBGene00020463 | |||||||
| NDB | locus_tag | CELE_T12E12.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020463|UniProtKB=Q22430 | |||||||
| family | PTHR22812 | ||||||||
| NCBI | gene | 177338 | |||||||
| RefSeq | protein | NM_068427.8 | |||||||
| TREEFAM | TREEFAM_ID | TF317326 | |||||||
| TrEMBL | UniProtAcc | Q22430 | |||||||
| UniProt_GCRP | UniProtAcc | Q22430 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Sep 2011 16:40:16 | WBPerson2970 | Name_change | CGC_name | cec-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cec | ||||||||
| Allele (49) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00075223 | ||||||||
| 00075224 | |||||||||
| 00075225 | |||||||||
| 00075226 | |||||||||
| 00075227 | |||||||||
| 00075228 | |||||||||
| Contained_in_operon | CEOP4168 | ||||||||
| Ortholog (49) | |||||||||
| Paralog | WBGene00001995 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00007615 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable chromatin binding activity and methylated histone binding activity. Predicted to be involved in chromatin organization and negative regulation of transcription by RNA polymerase II. Predicted to be part of pericentric heterochromatin. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); glioblastoma; and hematologic cancer (multiple). Is an ortholog of human CBX6 (chromobox 6); CBX7 (chromobox 7); and CBX8 (chromobox 8). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (18) | ||||||||
| Molecular_info | Corresponding_CDS | T12E12.2 | |||||||
| Corresponding_transcript | T12E12.2.1 | ||||||||
| Other_sequence | CRC02326_1 | ||||||||
| CR07306 | |||||||||
| CRC11748_1 | |||||||||
| FD514929.1 | |||||||||
| CSC00966_1 | |||||||||
| CR03368 | |||||||||
| CRC09794_1 | |||||||||
| Associated_feature | WBsf996537 | ||||||||
| WBsf228321 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00001903 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00113470 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053215 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001832 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035514 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018641 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062371 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00069470 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13919 | ||||||||
| Expr13921 | |||||||||
| Expr13922 | |||||||||
| Expr13923 | |||||||||
| Expr1023119 | |||||||||
| Expr1038923 | |||||||||
| Expr1156801 | |||||||||
| Expr2009837 | |||||||||
| Expr2028077 | |||||||||
| Drives_construct | WBCnstr00025120 | ||||||||
| Construct_product | WBCnstr00025120 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (95) | |||||||||
| SAGE_tag | SAGE:cctttgggat | Strand | Antisense | ||||||
| SAGE:atactcaactttcaatt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaatatggag | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:cttccgcagaaactgaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:atactcaact | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aactctaaaacttaaag | Strand | Antisense | |||||||
| SAGE:aaatatggagccgagtg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aactctaaaa | Strand | Antisense | |||||||
| Interaction (29) | |||||||||
| Map_info | Map | IV | Position | 1.83354 | Error | 0.005161 | |||
| Positive | Positive_clone | T12E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029257 | ||||||||
| WBPaper00055193 | |||||||||
| WBPaper00063400 | |||||||||
| WBPaper00063697 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
