WormBase Tree Display for Gene: WBGene00020457
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WBGene00020457 | SMap | S_parent | Sequence | T12B5 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | fbxa-67 | Person_evidence | WBPerson655 | |||
Sequence_name | T12B5.11 | ||||||
Molecular_name | T12B5.11 | ||||||
T12B5.11.1 | |||||||
CE20068 | |||||||
Other_name | CELE_T12B5.11 | Accession_evidence | NDB | BX284603 | |||
Public_name | fbxa-67 | ||||||
DB_info | Database | AceView | gene | 3B568 | |||
WormQTL | gene | WBGene00020457 | |||||
WormFlux | gene | WBGene00020457 | |||||
NDB | locus_tag | CELE_T12B5.11 | |||||
Panther | gene | CAEEL|WormBase=WBGene00020457|UniProtKB=Q9TZ24 | |||||
family | PTHR23015 | ||||||
NCBI | gene | 175258 | |||||
RefSeq | protein | NM_064901.6 | |||||
TREEFAM | TREEFAM_ID | TF322006 | |||||
TrEMBL | UniProtAcc | Q9TZ24 | |||||
UniProt_GCRP | UniProtAcc | Q9TZ24 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (153) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00037999 | Caenorhabditis briggsae | From_analysis | OMA | |||
WBGene00142261 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00088344 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||
WBGene00122765 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||
WBGene00083155 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00083213 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00083157 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00065190 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00083134 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00083192 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00065189 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00083166 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00083129 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00065183 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00065179 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
CSP28.g6532 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||
Csp5_scaffold_04232.g32424 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||
chrIII_pilon.g6856 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog (225) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in several structures, including ABplapaaapa; ABplppppaa; ABprapaaapa; ABprppppaa; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by twelve chemicals including bisphenol A; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T12B5.11 | |||||
Corresponding_transcript | T12B5.11.1 | ||||||
Associated_feature | WBsf650831 | ||||||
WBsf226166 | |||||||
WBsf226167 | |||||||
Experimental_info | RNAi_result (11) | ||||||
Expr_pattern | Expr1025504 | ||||||
Expr1156774 | |||||||
Expr2011568 | |||||||
Expr2029806 | |||||||
Drives_construct | WBCnstr00025123 | ||||||
Construct_product | WBCnstr00025123 | ||||||
Microarray_results (22) | |||||||
Expression_cluster (169) | |||||||
Interaction | WBInteraction000291995 | ||||||
WBInteraction000306350 | |||||||
WBInteraction000318032 | |||||||
WBInteraction000324010 | |||||||
WBInteraction000357468 | |||||||
WBInteraction000380177 | |||||||
Map_info | Map | III | Position | -25.0047 | Error | 0.011088 | |
Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |