WormBase Tree Display for Gene: WBGene00020457
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WBGene00020457 | SMap | S_parent | Sequence | T12B5 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (153) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (18) | |||||||
Paralog (225) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in several structures, including ABplapaaapa; ABplppppaa; ABprapaaapa; ABprppppaa; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by twelve chemicals including bisphenol A; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T12B5.11 | |||||
Corresponding_transcript | T12B5.11.1 | ||||||
Associated_feature | WBsf650831 | ||||||
WBsf226166 | |||||||
WBsf226167 | |||||||
Experimental_info | RNAi_result (11) | ||||||
Expr_pattern | Expr1025504 | ||||||
Expr1156774 | |||||||
Expr2011568 | |||||||
Expr2029806 | |||||||
Drives_construct | WBCnstr00025123 | ||||||
Construct_product | WBCnstr00025123 | ||||||
Microarray_results (22) | |||||||
Expression_cluster (169) | |||||||
Interaction | WBInteraction000291995 | ||||||
WBInteraction000306350 | |||||||
WBInteraction000318032 | |||||||
WBInteraction000324010 | |||||||
WBInteraction000357468 | |||||||
WBInteraction000380177 | |||||||
Map_info | Map | III | Position | -25.0047 | Error | 0.011088 | |
Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |