WormBase Tree Display for Gene: WBGene00020453
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| WBGene00020453 | SMap | S_parent | Sequence | CHROMOSOME_III | |||
|---|---|---|---|---|---|---|---|
| Identity (6) | |||||||
| Gene_info | Biotype | SO:0001217 | |||||
| Gene_class | fbxa | ||||||
| Allele (125) | |||||||
| RNASeq_FPKM (74) | |||||||
| Ortholog (25) | |||||||
| Paralog (222) | |||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
| Curator_confirmed | WBPerson567 | ||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
| Automated_description | Enriched in AFD; ASER; and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including rotenone; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||
| Curator_confirmed | WBPerson324 | ||||||
| WBPerson37462 | |||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
| Molecular_info | Corresponding_CDS | T12B5.6b | |||||
| T12B5.6c | |||||||
| Corresponding_CDS_history | T12B5.6:wp151 | ||||||
| T12B5.6a:wp253 | |||||||
| Corresponding_transcript | T12B5.6a | ||||||
| T12B5.6b.1 | |||||||
| T12B5.6c.1 | |||||||
| Other_sequence | Oden_isotig22831 | ||||||
| Associated_feature | WBsf991189 | ||||||
| WBsf1014150 | |||||||
| Experimental_info | RNAi_result | WBRNAi00035506 | Inferred_automatically | RNAi_primary | |||
| WBRNAi00018634 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053190 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006619 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1156782 | ||||||
| Expr2011557 | |||||||
| Expr2029795 | |||||||
| Drives_construct | WBCnstr00025127 | ||||||
| Construct_product | WBCnstr00025127 | ||||||
| Microarray_results (20) | |||||||
| Expression_cluster (127) | |||||||
| Interaction (27) | |||||||
| Map_info | Map | III | Position | -25.0866 | Error | 0.003123 | |
| Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
| Pseudo_map_position | |||||||
| Reference | WBPaper00012854 | ||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
| Method | Gene |
