WormBase Tree Display for Gene: WBGene00020449
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WBGene00020449 | SMap | S_parent | Sequence | T12B5 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | fbxa-54 | Person_evidence | WBPerson655 | |||
Sequence_name | T12B5.2 | ||||||
Molecular_name | T12B5.2 | ||||||
T12B5.2.1 | |||||||
CE20060 | |||||||
Other_name | CELE_T12B5.2 | Accession_evidence | NDB | BX284603 | |||
Public_name | fbxa-54 | ||||||
DB_info | Database | AceView | gene | 3B575 | |||
WormQTL | gene | WBGene00020449 | |||||
WormFlux | gene | WBGene00020449 | |||||
NDB | locus_tag | CELE_T12B5.2 | |||||
Panther | gene | CAEEL|WormBase=WBGene00020449|UniProtKB=Q9TZ21 | |||||
family | PTHR23015 | ||||||
NCBI | gene | 188441 | |||||
RefSeq | protein | NM_064904.5 | |||||
TREEFAM | TREEFAM_ID | TF322360 | |||||
TrEMBL | UniProtAcc | Q9TZ21 | |||||
UniProt_GCRP | UniProtAcc | Q9TZ21 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (136) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (26) | |||||||
Paralog (222) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in head neurons; intestine; and mechanosensory neurons based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; glp-1; and age-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including stavudine; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T12B5.2 | |||||
Corresponding_transcript | T12B5.2.1 | ||||||
Associated_feature | WBsf644937 | ||||||
WBsf991191 | |||||||
WBsf1014151 | |||||||
WBsf1014152 | |||||||
WBsf224422 | |||||||
WBsf224423 | |||||||
Experimental_info | RNAi_result | WBRNAi00035503 | Inferred_automatically | RNAi_primary | |||
WBRNAi00006661 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053184 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00018630 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (3) | |||||||
Drives_construct | WBCnstr00025131 | ||||||
Construct_product | WBCnstr00025131 | ||||||
Microarray_results (14) | |||||||
Expression_cluster (164) | |||||||
Interaction | WBInteraction000209742 | ||||||
WBInteraction000403527 | |||||||
WBInteraction000432723 | |||||||
WBInteraction000504151 | |||||||
Map_info | Map | III | Position | -24.9139 | Error | 0.013977 | |
Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |