WormBase Tree Display for Gene: WBGene00020423

WBGene00020423 SMap: S_parent: Sequence: K10D2
  Identity: Version: 2
    Name: CGC_name: prp-19 Person_evidence: WBPerson261
      Sequence_name: T10F2.4
      Molecular_name: T10F2.4
        T10F2.4.1
        CE38104
      Other_name: CELE_T10F2.4 Accession_evidence: NDB BX284603
      Public_name: prp-19
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 13 Apr 2012 16:20:48 WBPerson2970 Name_change: CGC_name: prp-19
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: prp
    Allele (26)
    Strain: WBStrain00002670
      WBStrain00036507
      WBStrain00036582
    RNASeq_FPKM (74)
    GO_annotation (26)
    Contained_in_operon: CEOP3260
    Ortholog: WBGene00068831 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00040133 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00143835 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00122015 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00104916 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00233951 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g5811 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g108 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19779 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g3723 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10514 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5104 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8188 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g23415 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16875 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00148.g5616 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_13648.g24314 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-prp-19 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12522 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02965.g28569 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_03883.g31518 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11030 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_008524 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08167 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_30026100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7654 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245768 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00287257 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003959 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0261119 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-263 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:17896 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:106247 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:708496 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00012887 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ubiquitin protein ligase activity. Involved in nuclear mRNA surveillance. Predicted to be located in cytoplasm and nucleus. Predicted to be part of Prp19 complex and U2-type catalytic step 1 spliceosome. Is an ortholog of human PRPF19 (pre-mRNA processing factor 19). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T10F2.4
    Corresponding_CDS_history: T10F2.4:wp138
    Corresponding_transcript: T10F2.4.1
    Other_sequence (80)
    Associated_feature: WBsf651034
      WBsf651035
      WBsf226645
  Experimental_info: RNAi_result (26)
    Expr_pattern: Chronogram282
      Expr6665
      Expr1016682
      Expr1038907
      Expr1156670
      Expr2015109
      Expr2033347
    Drives_construct: WBCnstr00003212
      WBCnstr00025152
    Construct_product: WBCnstr00025152
    Microarray_results (20)
    Expression_cluster (144)
    Interaction (162)
  Map_info: Map: III Position: -2.04089
    Positive: Positive_clone: T10F2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene