WormBase Tree Display for Gene: WBGene00020268
expand all nodes | collapse all nodes | view schema
| WBGene00020268 | SMap | S_parent | Sequence | T05H4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hpo-19 | Paper_evidence | WBPaper00038231 | |||||
| Person_evidence | WBPerson26 | ||||||||
| Sequence_name | T05H4.5 | ||||||||
| Molecular_name | T05H4.5 | ||||||||
| T05H4.5.1 | |||||||||
| CE13277 | |||||||||
| Other_name | CELE_T05H4.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | hpo-19 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Apr 2011 13:31:47 | WBPerson2970 | Name_change | CGC_name | hpo-19 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hpo | ||||||||
| Allele (34) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00028233 | ||||||||
| 00028234 | |||||||||
| 00028235 | |||||||||
| 00028236 | |||||||||
| 00028237 | |||||||||
| 00028238 | |||||||||
| 00124939 | |||||||||
| Contained_in_operon | CEOP5112 | ||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00020267 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013123 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The T05H4.5 gene encodes an ortholog of the human gene NADH-CYTOCHROME B5 REDUCTASE (DIA1), which when mutated leads to methemoglobinemia (OMIM:250800). | Paper_evidence | WBPaper00004637 | |||||
| Curator_confirmed | WBPerson1823 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable FAD binding activity. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in estrogen-receptor negative breast cancer and methemoglobinemia. Is an ortholog of human CYB5R1 (cytochrome b5 reductase 1); CYB5R2 (cytochrome b5 reductase 2); and CYB5R3 (cytochrome b5 reductase 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060076 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2873) | ||||
| DOID:10783 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2873) | ||||||
| DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2873) | ||||||
| Molecular_info | Corresponding_CDS | T05H4.5 | |||||||
| Corresponding_transcript | T05H4.5.1 | ||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf646879 | ||||||||
| WBsf661336 | |||||||||
| WBsf231879 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00009126 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00026207 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052592 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00088747 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00088640 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090940 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071536 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035243 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111686 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021433 | ||||||||
| Expr1038824 | |||||||||
| Expr1156206 | |||||||||
| Expr2012561 | |||||||||
| Expr2030798 | |||||||||
| Drives_construct | WBCnstr00025251 | ||||||||
| Construct_product | WBCnstr00025251 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction (65) | |||||||||
| Map_info | Map | V | Position | -0.168074 | Error | 0.002349 | |||
| Positive | Positive_clone | T05H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00049152 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
