WormBase Tree Display for Gene: WBGene00020251
expand all nodes | collapse all nodes | view schema
| WBGene00020251 | SMap | S_parent | Sequence | T05C1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | camt-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | T05C1.4 | ||||||||
| Molecular_name | T05C1.4a | ||||||||
| T05C1.4a.1 | |||||||||
| CE33443 | |||||||||
| T05C1.4b | |||||||||
| CE33444 | |||||||||
| T05C1.4c | |||||||||
| CE32207 | |||||||||
| T05C1.4b.1 | |||||||||
| T05C1.4c.1 | |||||||||
| Other_name | CELE_T05C1.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | camt-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 Dec 2004 16:07:27 | WBPerson2970 | Event | Acquires_merge | WBGene00043487 | ||||
| 3 | 22 Sep 2011 11:35:55 | WBPerson2970 | Name_change | CGC_name | camt-1 | ||||
| Acquires_merge | WBGene00043487 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | camt | ||||||||
| Allele (251) | |||||||||
| Strain | WBStrain00031462 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (39) | |||||||||
| Structured_description | Concise_description | T05C1.4 encodes, by alternative splicing, two members of the CAMTAfamily of calmodulin-binding transcriptional activators that arerequired for embryonic development; CAMTA proteins are conserved inanimals and plants but absent from unicellular eukaryotes, and may thusrepresent a transcriptional activator specific to multicellularorganisms; the common organization of CAMTA proteins is to have twoN-terminal DNA-binding domains (CG-1 and TIG), followed by two ankyrinrepeats, and then two or more calmodulin-binding IQ repeats; the domainorganization of T05C1.4 somewhat resembles that of NF-AT, anon-canonical Wnt transcription factor (TF) in other organisms than C.elegans. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00013032 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Dec 2006 00:00:00 | ||||||||
| Automated_description | Enables chromatin binding activity. Involved in positive chemotaxis; positive regulation of transcription by RNA polymerase II; and response to oxygen levels. Located in nucleus. Part of chromatin. Human ortholog(s) of this gene implicated in nonprogressive cerebellar ataxia with mental retardation. Is an ortholog of human CAMTA2 (calmodulin binding transcription activator 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050998 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18806) | ||||
| Molecular_info | Corresponding_CDS | T05C1.4a | |||||||
| T05C1.4b | |||||||||
| T05C1.4c | |||||||||
| Corresponding_transcript | T05C1.4a.1 | ||||||||
| T05C1.4b.1 | |||||||||
| T05C1.4c.1 | |||||||||
| Other_sequence (42) | |||||||||
| Associated_feature (17) | |||||||||
| Transcription_factor | WBTranscriptionFactor000241 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00001809 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052485 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018214 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103506 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035188 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052484 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018216 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016646 | ||||||||
| Expr1038816 | |||||||||
| Expr1156109 | |||||||||
| Expr2009713 | |||||||||
| Expr2027952 | |||||||||
| Drives_construct | WBCnstr00025265 | ||||||||
| Construct_product | WBCnstr00022560 | ||||||||
| WBCnstr00025265 | |||||||||
| Regulate_expr_cluster | WBPaper00061902:camt-1(ok515)_regulated_AFD | ||||||||
| WBPaper00061902:camt-1(ok515)_regulated_BAG | |||||||||
| WBPaper00061902:camt-1(ok515)_regulated_RMG | |||||||||
| WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR | |||||||||
| WBPaper00061902:CAMT-1_interacting | |||||||||
| Microarray_results (35) | |||||||||
| Expression_cluster (120) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | II | Position | -4.31047 | Error | 0.010436 | |||
| Positive | Positive_clone | T05C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00033395 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00061902 | |||||||||
| WBPaper00063687 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
