WormBase Tree Display for Gene: WBGene00020216
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| WBGene00020216 | SMap | S_parent | Sequence | T04G9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trap-2 | |||||||
| Sequence_name | T04G9.5 | ||||||||
| Molecular_name | T04G9.5 | ||||||||
| T04G9.5.1 | |||||||||
| CE04886 | |||||||||
| Other_name | CELE_T04G9.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | trap-2 | ||||||||
| DB_info | Database | AceView | gene | XB386 | |||||
| WormQTL | gene | WBGene00020216 | |||||||
| WormFlux | gene | WBGene00020216 | |||||||
| NDB | locus_tag | CELE_T04G9.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020216|UniProtKB=Q22169 | |||||||
| family | PTHR12861 | ||||||||
| NCBI | gene | 180422 | |||||||
| RefSeq | protein | NM_075749.8 | |||||||
| SwissProt | UniProtAcc | Q22169 | |||||||
| TREEFAM | TREEFAM_ID | TF314461 | |||||||
| UniProt_GCRP | UniProtAcc | Q22169 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Oct 2007 11:57:48 | WBPerson2970 | Name_change | CGC_name | trap-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trap | ||||||||
| Allele (16) | |||||||||
| Strain | WBStrain00035341 | ||||||||
| WBStrain00035342 | |||||||||
| WBStrain00035343 | |||||||||
| WBStrain00001378 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00074408 | ||||||||
| 00074409 | |||||||||
| 00074410 | |||||||||
| 00124904 | |||||||||
| 00124905 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00010678 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be located in endoplasmic reticulum membrane. Expressed in several structures, including hypodermis and muscle cell. Is an ortholog of human SSR2 (signal sequence receptor subunit 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T04G9.5 | |||||||
| Corresponding_transcript | T04G9.5.1 | ||||||||
| Other_sequence (66) | |||||||||
| Associated_feature | WBsf653665 | ||||||||
| WBsf670077 | |||||||||
| WBsf670078 | |||||||||
| WBsf982102 | |||||||||
| WBsf1003858 | |||||||||
| WBsf1003859 | |||||||||
| WBsf1022169 | |||||||||
| WBsf236959 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052411 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009111 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033305 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00001151 | ||||||||
| WBCnstr00001152 | |||||||||
| WBCnstr00001153 | |||||||||
| WBCnstr00002269 | |||||||||
| WBCnstr00012795 | |||||||||
| WBCnstr00015942 | |||||||||
| WBCnstr00025292 | |||||||||
| Construct_product | WBCnstr00025292 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (198) | |||||||||
| Interaction (102) | |||||||||
| Map_info | Map | X | Position | -19.5013 | |||||
| Positive | Positive_clone | T04G9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00047692 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
