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WormBase Tree Display for Gene: WBGene00020141

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Name Class

WBGene00020141SMapS_parentSequenceT01C4
IdentityVersion2
NameCGC_namelmd-5Person_evidenceWBPerson8574
Sequence_nameT01C4.1
Molecular_nameT01C4.1
T01C4.1.1
CE51458
Other_nameCELE_T01C4.1Accession_evidenceNDBBX284605
Public_namelmd-5
DB_infoDatabase (9)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:02WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
225 Jan 2013 14:30:54WBPerson2970Name_changeCGC_namelmd-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlmd
Allele (80)
RNASeq_FPKM (74)
GO_annotation00087597
00087598
00087599
00087600
00124848
00124849
Ortholog (41)
Paralog (38)
Structured_descriptionAutomated_descriptionPredicted to enable chitin binding activity and hydrolase activity, acting on glycosyl bonds. Predicted to be involved in carbohydrate metabolic process and rejection of self pollen.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST01C4.1
Corresponding_CDS_historyT01C4.1:wp252
Corresponding_transcriptT01C4.1.1
Associated_featureWBsf1000436
Experimental_infoRNAi_resultWBRNAi00052102Inferred_automaticallyRNAi_primary
WBRNAi00017952Inferred_automaticallyRNAi_primary
WBRNAi00103499Inferred_automaticallyRNAi_primary
WBRNAi00017957Inferred_automaticallyRNAi_primary
Expr_patternExpr1028800
Expr1155734
Expr2013233
Expr2031464
Drives_constructWBCnstr00025348
Construct_productWBCnstr00025348
Microarray_results (18)
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00033070:Elbe_upregulated
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00045050:csr-1(hypomorph)_upregulated
WBPaper00045390:tunicamycin_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00045774:clk-1_downregulated_CoQ10_independent
WBPaper00048971:daf-16(mgDf50)_downregulated_L1
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049626:UNC-75_target
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
WBPaper00053888:drh-3(rrr2)_downregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059739:hira-1(gk835598)_upregulated_L1
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060886:spr-5(by101);met-2(n4256)_downregulated
WBPaper00061340:g1A
WBPaper00061340:g1A_g1P
WBPaper00061527:xbx-3-DH11.5_20397
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064156:lbp-3(overexpress)_upregulated
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064473:ets-4(rrr16)_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065841:41_0
WBPaper00065841:41_1
WBPaper00065841:41_2
WBPaper00065841:89_0
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031252:AIN-1_IP_enriched
WBPaper00036286:Pattern_F
WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-exposed_3h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00047070:N2_UV_upregulated
WBPaper00048989:N2_rapamycin_downregulated
InteractionWBInteraction000170445
WBInteraction000286748
Map_infoMapVPosition0.599267
PositivePositive_cloneT01C4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00048648
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene