WormBase Tree Display for Gene: WBGene00020141

WBGene00020141 SMap: S_parent: Sequence: T01C4
  Identity: Version: 2
    Name: CGC_name: lmd-5 Person_evidence: WBPerson8574
      Sequence_name: T01C4.1
      Molecular_name: T01C4.1
        T01C4.1.1
        CE51458
      Other_name: CELE_T01C4.1 Accession_evidence: NDB BX284605
      Public_name: lmd-5
    DB_info: Database: AceView gene 5H605
        WormQTL gene WBGene00020141
        WormFlux gene WBGene00020141
        NDB locus_tag CELE_T01C4.1
        Panther gene CAEEL|WormBase=WBGene00020141|UniProtKB=Q94298
          family PTHR46073
        NCBI gene 187942
        RefSeq protein NM_001322564.2
        TrEMBL UniProtAcc Q94298
        UniProt_GCRP UniProtAcc Q94298
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 25 Jan 2013 14:30:54 WBPerson2970 Name_change: CGC_name: lmd-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lmd
    Allele (80)
    RNASeq_FPKM (74)
    GO_annotation: 00087597
      00087598
      00087599
      00087600
      00124848
      00124849
    Ortholog: WBGene00024130 Caenorhabditis briggsae From_analysis: OrthoMCL
            WormBase-Compara
      WBGene00027501 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00119277 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
      WBGene00135754 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
      WBGene00126357 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
      WBGene00097310 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00147068 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00053171 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00221226 Brugia malayi From_analysis: WormBase-Compara
      WBGene00231000 Brugia malayi From_analysis: WormBase-Compara
      CSP26.g16969 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g14271 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16266 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g16269 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g11632 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g11633 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g11634 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g16808 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP40.g14177 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00059.g2971 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g16865 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21689 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00403.g10852 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_018954 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g11178 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g11184 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g11187 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g4912 Panagrellus redivivus From_analysis: WormBase-Compara
      chrV_pilon.g14601 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246212 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00249377 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00282861 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00266834 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292959 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296698 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296700 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296944 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296945 Trichuris muris From_analysis: WormBase-Compara
      WBGene00300943 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002779 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
      FB:FBgn0263132 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoInspector
    Paralog (38)
    Structured_description: Automated_description: Predicted to enable chitin binding activity and hydrolase activity, acting on glycosyl bonds. Predicted to be involved in carbohydrate metabolic process and rejection of self pollen. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T01C4.1
    Corresponding_CDS_history: T01C4.1:wp252
    Corresponding_transcript: T01C4.1.1
    Associated_feature: WBsf1000436
  Experimental_info: RNAi_result: WBRNAi00052102 Inferred_automatically: RNAi_primary
      WBRNAi00017952 Inferred_automatically: RNAi_primary
      WBRNAi00103499 Inferred_automatically: RNAi_primary
      WBRNAi00017957 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028800
      Expr1155734
      Expr2013233
      Expr2031464
    Drives_construct: WBCnstr00025348
    Construct_product: WBCnstr00025348
    Microarray_results (18)
    Expression_cluster (81)
    Interaction: WBInteraction000170445
      WBInteraction000286748
  Map_info: Map: V Position: 0.599267
    Positive: Positive_clone: T01C4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00048648
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene