WormBase Tree Display for Gene: WBGene00020112
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| WBGene00020112 | SMap | S_parent | Sequence | R151 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pfd-5 | Person_evidence | WBPerson3663 | |||||
| WBPerson2136 | |||||||||
| Sequence_name | R151.9 | ||||||||
| Molecular_name | R151.9 | ||||||||
| R151.9.1 | |||||||||
| CE00827 | |||||||||
| Other_name | 3H288 | Accession_evidence | EMBL | AF303258 | |||||
| CELE_R151.9 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | pfd-5 | ||||||||
| DB_info | Database | AceView | gene | 3I288 | |||||
| WormQTL | gene | WBGene00020112 | |||||||
| WormFlux | gene | WBGene00020112 | |||||||
| NDB | locus_tag | CELE_R151.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020112|UniProtKB=Q21993 | |||||||
| family | PTHR12674 | ||||||||
| NCBI | gene | 176013 | |||||||
| RefSeq | protein | NM_066181.6 | |||||||
| SwissProt | UniProtAcc | Q21993 | |||||||
| TREEFAM | TREEFAM_ID | TF106509 | |||||||
| UniProt_GCRP | UniProtAcc | Q21993 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 02 Aug 2006 11:39:27 | WBPerson2970 | Name_change | CGC_name | pfd-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pfd | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00001158 | ||||||||
| WBStrain00036684 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00073616 | ||||||||
| 00073617 | |||||||||
| 00073618 | |||||||||
| 00073619 | |||||||||
| 00073620 | |||||||||
| 00124826 | |||||||||
| 00124827 | |||||||||
| 00124828 | |||||||||
| Contained_in_operon | CEOP3420 | ||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00018071 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Concise_description | pfd-5 encodes a putative prefoldin 5 subunit, orthologous to human PFDN5 (OMIM:604899), that is required for normal microtubule growth, embryonic and larval viability, fertility, vulval development, and locomotion; PFD-5 is expressed in most, if not all, tissues; pfd-5(RNAi) animals show sterile progeny, larval arrest or lethality, uncoordination, and abnormal body shapes, and pfd-5(RNAi) embryos show a reduced microtubule growth rate. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| WBPaper00024497 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00031309 | |||||||||
| WBPaper00031362 | |||||||||
| WBPaper00031363 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable unfolded protein binding activity. Predicted to be involved in RNA polymerase I assembly; RNA polymerase II core complex assembly; and RNA polymerase III assembly. Predicted to be located in cytoplasm. Predicted to be part of prefoldin complex. Expressed in body wall musculature; head muscle; pharyngeal muscle cell; and vulval muscle. Is an ortholog of human PFDN5 (prefoldin subunit 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R151.9 | |||||||
| Corresponding_transcript | R151.9.1 | ||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf651181 | ||||||||
| WBsf666471 | |||||||||
| WBsf226932 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00067299 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00002818 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026126 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051983 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067873 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002660 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009079 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034943 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7840 | ||||||||
| Expr1025899 | |||||||||
| Expr1038748 | |||||||||
| Expr1155625 | |||||||||
| Expr2014845 | |||||||||
| Expr2033080 | |||||||||
| Drives_construct | WBCnstr00002050 | ||||||||
| WBCnstr00025366 | |||||||||
| Construct_product | WBCnstr00025366 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (91) | |||||||||
| Map_info | Map | III | Position | -0.772 | |||||
| Positive | Positive_clone | R151 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057218 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-0.772512) | |||||||||
| [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-0.769642) | |||||||||
| Method | Gene |
