WormBase Tree Display for Gene: WBGene00019820
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| WBGene00019820 | SMap | S_parent | Sequence | R02D3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cogc-8 | Paper_evidence | WBPaper00026979 | |||||
| Person_evidence | WBPerson449 | ||||||||
| Sequence_name | R02D3.2 | ||||||||
| Molecular_name | R02D3.2 | ||||||||
| R02D3.2.1 | |||||||||
| CE18096 | |||||||||
| Other_name | CELE_R02D3.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cogc-8 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 16 Jan 2006 17:12:59 | WBPerson2970 | Name_change | CGC_name | cogc-8 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cogc | ||||||||
| Allele (41) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032578 | ||||||||
| 00032579 | |||||||||
| 00032580 | |||||||||
| 00032581 | |||||||||
| 00032582 | |||||||||
| 00032583 | |||||||||
| 00032584 | |||||||||
| 00032585 | |||||||||
| 00124585 | |||||||||
| Ortholog (52) | |||||||||
| Structured_description | Concise_description | cogc-8 encodes an ortholog of mammalian COG-8, a subunit of lobe B ofthe conserved oligomeric Golgi complex (COGC); COGC-8 is weakly requiredfor normal gonadal distal tip cell migration, a process that alsorequires seven other orthologs of COGC subunits; like other lobe Bsubunits in both C. elegans and S. cerevisiae, COGC-8 is only partiallyrequired for normal function, while lobe A subunits are stronglyrequired in either worms or yeast. | Paper_evidence | WBPaper00026979 | |||||
| WBPaper00028363 | |||||||||
| WBPaper00028599 | |||||||||
| WBPaper00028603 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 25 Oct 2006 00:00:00 | ||||||||
| Automated_description | Involved in gonad morphogenesis and regulation of cell migration. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIh. Is an ortholog of human COG8 (component of oligomeric golgi complex 8). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070260 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18623) | ||||
| Molecular_info | Corresponding_CDS | R02D3.2 | |||||||
| Corresponding_transcript | R02D3.2.1 | ||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf645745 | ||||||||
| WBsf659867 | |||||||||
| WBsf995108 | |||||||||
| WBsf227817 | |||||||||
| WBsf227818 | |||||||||
| WBsf227819 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00064306 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017313 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00099110 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034527 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051123 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024523 | ||||||||
| Expr1038587 | |||||||||
| Expr1154832 | |||||||||
| Expr2010296 | |||||||||
| Expr2028538 | |||||||||
| Drives_construct | WBCnstr00025571 | ||||||||
| Construct_product | WBCnstr00025571 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (85) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | IV | Position | -26.7831 | Error | 0.004516 | |||
| Positive | Positive_clone | R02D3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032281 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
