WormBase Tree Display for Gene: WBGene00019679
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| WBGene00019679 | SMap | S_parent | Sequence | K12H4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | spcs-3 | |||||||
| Sequence_name | K12H4.4 | ||||||||
| Molecular_name | K12H4.4 | ||||||||
| K12H4.4.1 | |||||||||
| CE00269 | |||||||||
| Other_name | phi-20 | Person_evidence | WBPerson2582 | ||||||
| CELE_K12H4.4 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | spcs-3 | ||||||||
| DB_info | Database | AceView | gene | 3J133 | |||||
| WormQTL | gene | WBGene00019679 | |||||||
| WormFlux | gene | WBGene00019679 | |||||||
| NDB | locus_tag | CELE_K12H4.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019679|UniProtKB=P34525 | |||||||
| family | PTHR12804 | ||||||||
| NCBI | gene | 176133 | |||||||
| RefSeq | protein | NM_066354.7 | |||||||
| SwissProt | UniProtAcc | P34525 | |||||||
| TREEFAM | TREEFAM_ID | TF300185 | |||||||
| UniProt_GCRP | UniProtAcc | P34525 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-20 | ||||
| 3 | 12 Nov 2018 16:28:49 | WBPerson1983 | Name_change | CGC_name | spcs-3 | ||||
| Other_name | phi-20 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spcs | ||||||||
| Allele (11) | |||||||||
| Strain | WBStrain00051310 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP3476 | ||||||||
| Ortholog (41) | |||||||||
| Structured_description | Automated_description | Involved in IRE1-mediated unfolded protein response. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of signal peptidase complex. Is an ortholog of human SPCS3 (signal peptidase complex subunit 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K12H4.4 | |||||||
| Corresponding_transcript | K12H4.4.1 | ||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf225333 | ||||||||
| WBsf225334 | |||||||||
| WBsf225335 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr1010470 | ||||||||
| Expr1038498 | |||||||||
| Expr1154391 | |||||||||
| Expr2005101 | |||||||||
| Expr2023321 | |||||||||
| Drives_construct | WBCnstr00025676 | ||||||||
| Construct_product | WBCnstr00025676 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | III | Position | -0.412903 | |||||
| Positive | Positive_clone | K12H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065275 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
