WormBase Tree Display for Gene: WBGene00019584
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| WBGene00019584 | SMap | S_parent | Sequence | K09F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-12 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | K09F5.5 | ||||||||
| Molecular_name | K09F5.5 | ||||||||
| K09F5.5.1 | |||||||||
| CE35742 | |||||||||
| Other_name | CELE_K09F5.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | set-12 | ||||||||
| DB_info | Database | AceView | gene | XI346 | |||||
| WormQTL | gene | WBGene00019584 | |||||||
| WormFlux | gene | WBGene00019584 | |||||||
| NDB | locus_tag | CELE_K09F5.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019584|UniProtKB=Q21404 | |||||||
| family | PTHR22884 | ||||||||
| NCBI | gene | 187229 | |||||||
| RefSeq | protein | NM_076905.6 | |||||||
| TrEMBL | UniProtAcc | Q21404 | |||||||
| UniProt_GCRP | UniProtAcc | Q21404 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-12 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (62) | |||||||||
| Strain | WBStrain00027457 | ||||||||
| WBStrain00032712 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (35) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | set-12 encodes a putative histone H3 lysine-9 methyltransferase with no non-nematode orthologs; neither set-12(n4442) nor set-12(RNAi) have any obvious phenotypes. | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable histone H3K36 methyltransferase activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of chromatin. Expressed in germ line and hypodermis. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K09F5.5 | |||||||
| Corresponding_CDS_history | K09F5.5:wp108 | ||||||||
| Corresponding_transcript | K09F5.5.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00034214 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050444 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016929 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091499 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14362 | ||||||||
| Expr1019204 | |||||||||
| Expr1038456 | |||||||||
| Expr1154149 | |||||||||
| Expr2015756 | |||||||||
| Expr2033989 | |||||||||
| Drives_construct | WBCnstr00025749 | ||||||||
| Construct_product | WBCnstr00025749 | ||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction | WBInteraction000041937 | ||||||||
| WBInteraction000043363 | |||||||||
| WBInteraction000233206 | |||||||||
| WBInteraction000290590 | |||||||||
| WBInteraction000359291 | |||||||||
| WBInteraction000411898 | |||||||||
| WBInteraction000435413 | |||||||||
| WBInteraction000527826 | |||||||||
| Map_info | Map | X | Position | -1.316 | |||||
| Positive | Positive_clone | K09F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030864 | ||||||||
| WBPaper00036383 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064957 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200225 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-1.32135) | |||||||||
| Method | Gene |
