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WormBase Tree Display for Gene: WBGene00019545

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Name Class

WBGene00019545SMapS_parentSequenceK09B3
IdentityVersion1
NameSequence_nameK09B3.1
Molecular_nameK09B3.1a
K09B3.1a.1
CE31560
K09B3.1b
CE48712
K09B3.1c
CE49064
K09B3.1b.1
K09B3.1c.1
Other_nameCELE_K09B3.1Accession_evidenceNDBBX284604
Public_nameK09B3.1
DB_infoDatabaseAceViewgene4E561
WormQTLgeneWBGene00019545
WormFluxgeneWBGene00019545
NDBlocus_tagCELE_K09B3.1
NCBIgene187188
RefSeqproteinNM_001380162.1
NM_001307318.2
NM_068014.5
TrEMBLUniProtAccU4PQR0
Q94268
U4PDV0
UniProt_GCRPUniProtAccU4PQR0
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:01WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (23)
RNASeq_FPKM (74)
OrthologWBGene00030105Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00075094Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00068404Caenorhabditis remaneiFrom_analysisOMA
WormBase-Compara
WBGene00147988Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00095633Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00192484Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00176367Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g8004Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g20542Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21757Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g7448Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g5386Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g787Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g27851Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g14085Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-K09B3.1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15711Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00329.g9532Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21413Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_015054Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_40079700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g10037Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in ABplpppapa; ABprpppapa; AFD; head mesodermal cell; and interfacial epithelial cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by Zidovudine; glycine; and Chlorpyrifos based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: ShK domain-like and ShKT domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK09B3.1a
K09B3.1b
K09B3.1c
Corresponding_CDS_historyK09B3.1:wp82
Corresponding_transcriptK09B3.1a.1
K09B3.1b.1
K09B3.1c.1
Other_sequenceName_isotig04294
NAC01975_1
BU087921.1
Associated_featureWBsf645885
WBsf228124
Experimental_infoRNAi_resultWBRNAi00034185Inferred_automaticallyRNAi_primary
WBRNAi00050377Inferred_automaticallyRNAi_primary
WBRNAi00016875Inferred_automaticallyRNAi_primary
Expr_patternExpr1026040
Expr1154082
Expr2004955
Expr2023177
Microarray_results (21)
Expression_cluster (94)
InteractionWBInteraction000438765
Map_infoPositivePositive_cloneK09B3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV-2.22412
MethodGene