WormBase Tree Display for Gene: WBGene00019466
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| WBGene00019466 | SMap | S_parent | Sequence | K07B1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tos-1 | Person_evidence | WBPerson2495 | |||||
| WBPerson268 | |||||||||
| Sequence_name | K07B1.6 | ||||||||
| Molecular_name | K07B1.6a | ||||||||
| K07B1.6a.1 | |||||||||
| CE11886 | |||||||||
| K07B1.6b | |||||||||
| CE47270 | |||||||||
| K07B1.6b.1 | |||||||||
| K07B1.6b.2 | |||||||||
| K07B1.6c | |||||||||
| K07B1.6d | |||||||||
| K07B1.6e | |||||||||
| Other_name | CELE_K07B1.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | tos-1 | ||||||||
| DB_info | Database | AceView | gene | 5J820 | |||||
| WormQTL | gene | WBGene00019466 | |||||||
| WormFlux | gene | WBGene00019466 | |||||||
| NDB | locus_tag | CELE_K07B1.6 | |||||||
| NCBI | gene | 3565833 | |||||||
| RefSeq | protein | NR_133619.1 | |||||||
| NR_133618.1 | |||||||||
| NM_001392573.1 | |||||||||
| NM_001380724.3 | |||||||||
| NR_133617.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF320143 | |||||||
| TrEMBL | UniProtAcc | H2KZK5 | |||||||
| Q95R01 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KZK5 | |||||||
| RNAcentral | URSid | URS00008D2FEB | |||||||
| URS00008D5AF4 | |||||||||
| URS00008DCAC8 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Nov 2010 13:55:01 | WBPerson2970 | Name_change | CGC_name | tos-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tos | ||||||||
| Allele (74) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Paralog | WBGene00045406 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Structured_description | Automated_description | Enriched in several structures, including ABarpapaapp; ABplaaaaapp; germ line; intestine; and neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; rde-1; and sir-2.1 based on microarray and RNA-seq studies. Is affected by thirteen chemicals including aldicarb; rotenone; and Rifampin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K07B1.6a | |||||||
| K07B1.6b | |||||||||
| Corresponding_CDS_history | K07B1.6b:wp197 | ||||||||
| K07B1.6b:wp230 | |||||||||
| K07B1.6c:wp250 | |||||||||
| K07B1.6d:wp250 | |||||||||
| Corresponding_transcript | K07B1.6c | ||||||||
| K07B1.6d | |||||||||
| K07B1.6e | |||||||||
| K07B1.6a.1 | |||||||||
| K07B1.6b.1 | |||||||||
| K07B1.6b.2 | |||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf652903 | ||||||||
| WBsf652904 | |||||||||
| WBsf652905 | |||||||||
| WBsf668668 | |||||||||
| WBsf669222 | |||||||||
| WBsf1000871 | |||||||||
| WBsf1000872 | |||||||||
| WBsf234221 | |||||||||
| WBsf234222 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00001245 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050117 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016697 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050114 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034047 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050115 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027404 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011398 | ||||||||
| Expr1038410 | |||||||||
| Expr1153816 | |||||||||
| Expr2017462 | |||||||||
| Expr2035601 | |||||||||
| Microarray_results (51) | |||||||||
| Expression_cluster (202) | |||||||||
| Interaction | WBInteraction000327805 | ||||||||
| WBInteraction000438626 | |||||||||
| WBInteraction000455485 | |||||||||
| WBInteraction000544304 | |||||||||
| Map_info | Map | V | Position | 2.00205 | Error | 0.001954 | |||
| Positive | Positive_clone | K07B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00039705 | ||||||||
| WBPaper00040388 | |||||||||
| WBPaper00041328 | |||||||||
| WBPaper00043872 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
