WormBase Tree Display for Gene: WBGene00019299
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| WBGene00019299 | SMap | S_parent | Sequence | K02D7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | snai-1 | Person_evidence | WBPerson2634 | |||||
| WBPerson2601 | |||||||||
| Sequence_name | K02D7.2 | ||||||||
| Molecular_name | K02D7.2 | ||||||||
| K02D7.2.1 | |||||||||
| CE30286 | |||||||||
| Other_name | snai-2 | Person_evidence | WBPerson2634 | ||||||
| WBPerson2601 | |||||||||
| CELE_K02D7.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | snai-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Jan 2015 16:33:20 | WBPerson2970 | Name_change | CGC_name | snai-1 | ||||
| Other_name | snai-2 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snai | ||||||||
| Allele (42) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033880 | ||||||||
| 00033881 | |||||||||
| 00033882 | |||||||||
| 00033883 | |||||||||
| Ortholog (30) | |||||||||
| Paralog (21) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in PHAL; PHAR; PHBL; PHBR; and amphid neurons. Human ortholog(s) of this gene implicated in colorectal cancer; oral mucosa leukoplakia; and piebaldism. Is an ortholog of human SNAI1 (snail family transcriptional repressor 1) and SNAI2 (snail family transcriptional repressor 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11128) | ||||
| DOID:3263 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11094) | ||||||
| DOID:9655 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11128) | ||||||
| Molecular_info | Corresponding_CDS | K02D7.2 | |||||||
| Corresponding_transcript | K02D7.2.1 | ||||||||
| Other_sequence | HBC08348_1 | ||||||||
| Oden_isotig28302 | |||||||||
| Oden_isotig15721 | |||||||||
| Dviv_isotig19526 | |||||||||
| FM207829.1 | |||||||||
| Oden_isotig15720 | |||||||||
| EE724182.1 | |||||||||
| Dviv_isotig19527 | |||||||||
| Associated_feature | WBsf667700 | ||||||||
| WBsf667701 | |||||||||
| WBsf718025 | |||||||||
| WBsf978761 | |||||||||
| WBsf995118 | |||||||||
| WBsf1016533 | |||||||||
| WBsf229670 | |||||||||
| Transcription_factor | WBTranscriptionFactor000831 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00070186 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049696 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11287 | ||||||||
| Expr1021512 | |||||||||
| Expr1153417 | |||||||||
| Expr2015936 | |||||||||
| Expr2034169 | |||||||||
| Drives_construct | WBCnstr00018737 | ||||||||
| WBCnstr00025934 | |||||||||
| Construct_product | WBCnstr00025934 | ||||||||
| WBCnstr00038832 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (50) | |||||||||
| Interaction (56) | |||||||||
| Map_info | Map | IV | Position | -26.6522 | |||||
| Positive | Positive_clone | K02D7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00033118 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046606 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
